RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA942359", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA942359 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6026074 6026074 PRJNA942359_P_NODE_1485_length_635_cov_10.599644_g1375_i0 PRJNA942359 1485 635 10.599644 67.3077394 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 1173 0   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g1375 i0 100 47.2015748031496 635 0 100 0 1 635 1357 1991 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 29973 1173 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
11126780 11126780 PRJNA942359_P_NODE_8649_length_295_cov_1.234234_g8534_i0 PRJNA942359 8649 295 1.234234 3.6409903 Naegleria sp. 37103 Heterolobosea other_Eukaryota 468 2.29e-127   NTclustered gi|2651357798|gb|PP174311.1| 37103 g8534 i0 95.254 14.0237288135593 295 14 100 0 1 295 3075 3369 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4137 468 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
16225821 16225821 PRJNA942359_P_NODE_133_length_1691_cov_13.425216_g107_i0 PRJNA942359 133 1691 13.425216 227.02040256 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 989 0   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g107 i0 84.956 33.0881135422827 1017 108 73 32 1 1003 2599 3584 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 55952 989 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
23875554 23875554 PRJNA942359_P_NODE_299_length_1291_cov_14.642857_g249_i0 PRJNA942359 299 1291 14.642857 189.03928387 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 2385 0   NTclustered gi|399764212|gb|JQ271723.1| 74082 g249 i0 100 48.7885360185902 1291 0 100 0 1 1291 31 1321 Vahlkampfia avara strain 4171L 18S ribosomal RNA gene, partial sequence blastn 62986 2385 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;