RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA940501" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA940501 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30404761 30404761 PRJNA940501_S_NODE_206613_length_191_cov_1.270270_g205795_i0 PRJNA940501 206613 191 1.27027 2.4262157 Candidatus Methanomethylicia archaeon 2268187 Archaea Archaea 41.2 0.0338   NR HDI46417.1 2268187 g205795 i0 37 0.722513089005236 46 28 72.3 1 171 34 55 99 HDI46417.1 methanogenesis marker 6 protein [Candidatus Methanomethylicia archaeon] diamond 138 41.2 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia       Candidatus Methanomethylicia archaeon
31384112 31384112 PRJNA940501_S_NODE_192276_length_195_cov_2.375000_g191458_i0 PRJNA940501 192276 195 2.375 4.63125 Desulfurococcaceae archaeon 2184738 Archaea Archaea 44.3 0.00567   NR MEM4558218.1 2184738 g191458 i0 32.8 0.938461538461538 61 33 83.1 2 13 174 114 173 MEM4558218.1 hypothetical protein [Desulfurococcaceae archaeon] diamond 183 44.3 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae   Desulfurococcaceae archaeon
32238426 32238426 PRJNA940501_S_NODE_21738_length_355_cov_1.211538_g20920_i0 PRJNA940501 21738 355 1.211538 4.3009599 Staphylothermus sp. 2820299 Archaea Archaea 68.6 1.25e-10   NR MCD6196230.1 2820299 g20920 i0 45.7 1.76619718309859 70 36 57.5 1 1 204 987 1056 MCD6196230.1 cellobiose phosphorylase [Staphylothermus sp.] diamond 627 68.6 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;