RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA940501" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA940501 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20048298 20048298 PRJNA940501_S_NODE_57176_length_275_cov_3.689655_g56358_i0 PRJNA940501 57176 275 3.689655 10.14655125 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 52.8 0.025   NTclustered gi|2794896955|ref|XM_067912647.1| 135588 g56358 i0 100 0.101818181818182 28 0 10 0 224 251 2045 2072 Histomonas meleagridis uncharacterized protein (GO595_010015), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28130808 28130808 PRJNA940501_S_NODE_208025_length_190_cov_2.387755_g207207_i0 PRJNA940501 208025 190 2.387755 4.5367345 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 41.2 0.012   NR XP_001580960.1 412133 g207207 i0 35 1.89473684210526 60 25 83.7 2 179 21 8 60 XP_001580960.1 hypothetical protein TVAGG3_0271840 [Trichomonas vaginalis G3] diamond 360 41.6 0.990384615384615 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32712040 32712040 PRJNA940501_S_NODE_90560_length_244_cov_3.273632_g89742_i0 PRJNA940501 90560 244 3.273632 7.98766208 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.4 1.46e-5   NR XP_068367999.1 1144522 g89742 i0 52.3 0.540983606557377 44 20 52.9 1 9 137 240 283 XP_068367999.1 uncharacterized protein TRFO_42868 [Tritrichomonas foetus] diamond 132 52.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;