RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA940501" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA940501 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30688539 30688539 PRJNA940501_S_NODE_14473_length_404_cov_13.177285_g13660_i0 PRJNA940501 14473 404 13.177285 53.2362314 Nitrosopumilus sp. 2024843 Archaea Archaea 63.2 1.17e-8   NR MDA7495390.1 2024843 g13660 i0 39.5 0.638613861386139 86 44 62.4 3 399 148 235 314 MDA7495390.1 hypothetical protein [Nitrosopumilus sp.] diamond 258 63.2 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
30846702 30846702 PRJNA940501_S_NODE_208534_length_190_cov_1.918367_g207716_i0 PRJNA940501 208534 190 1.918367 3.6448973 Candidatus Nitrososphaera evergladensis 1459637 Archaea Archaea 48.5 1.59e-4   NR WP_148700525.1 1459637 g207716 i0 39.3 0.963157894736842 61 36 96.3 1 189 7 47 106 WP_148700525.1 polysaccharide deacetylase family protein [Candidatus Nitrososphaera evergladensis] diamond 183 48.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Candidatus Nitrososphaera evergladensis
31130802 31130802 PRJNA940501_S_NODE_74575_length_257_cov_2.415888_g73757_i0 PRJNA940501 74575 257 2.415888 6.20883216 Nitrosarchaeum sp. 2026886 Archaea Archaea 48.9 3.01e-4   NR HSA76138.1 2026886 g73757 i0 65.7 0.408560311284047 35 12 40.9 0 2 106 900 934 HSA76138.1 alpha-ketoglutarate-dependent dioxygenase AlkB [Nitrosarchaeum sp.] diamond 105 48.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp.
31162336 31162336 PRJNA940501_S_NODE_117995_length_227_cov_1.532609_g117177_i0 PRJNA940501 117995 227 1.532609 3.47902243 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 43.5 0.0158   NR HET7284302.1 2169593 g117177 i0 57.6 0.436123348017621 33 12 43.6 1 128 30 254 284 HET7284302.1 integrase [Nitrososphaeraceae archaeon] diamond 99 43.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
32333393 32333393 PRJNA940501_S_NODE_192239_length_195_cov_2.473684_g191421_i0 PRJNA940501 192239 195 2.473684 4.8236838 Candidatus Nitrosocosmicus sp. 2109671 Archaea Archaea 76.3 4.71e-15   NR MDR4491959.1 2109671 g191421 i0 57.9 2.58461538461538 57 24 87.7 0 180 10 147 203 MDR4491959.1 FkbM family methyltransferase [Candidatus Nitrosocosmicus sp.] diamond 504 76.3 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus sp.
32869462 32869462 PRJNA940501_S_NODE_32200_length_318_cov_3.581818_g31382_i0 PRJNA940501 32200 318 3.581818 11.39018124 Nitrosarchaeum sp. 2026886 Archaea Archaea 68.2 1.1e-10   NR HSA76138.1 2026886 g31382 i0 61.5 0.490566037735849 52 20 49.1 0 318 163 883 934 HSA76138.1 alpha-ketoglutarate-dependent dioxygenase AlkB [Nitrosarchaeum sp.] diamond 156 68.2 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;