RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA940501" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA940501 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29046378 29046378 PRJNA940501_S_NODE_116028_length_228_cov_1.778378_g115210_i0 PRJNA940501 116028 228 1.778378 4.05470184 Lentisphaeria bacterium 2053569 Bacteria Bacteria 42.7 0.0302   NR MBO5990022.1 2053569 g115210 i0 43.2 0.578947368421053 44 25 57.9 0 24 155 18 61 MBO5990022.1 TolC family protein [Lentisphaeria bacterium] diamond 132 42.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31953308 31953308 PRJNA940501_S_NODE_351297_length_157_cov_1.649123_g350479_i0 PRJNA940501 351297 157 1.649123 2.58912311 Lentisphaeria bacterium 2053569 Bacteria Bacteria 107 1.48e-27   NR MBO5202160.1 2053569 g350479 i0 98 0.974522292993631 51 1 97.5 0 5 157 133 183 MBO5202160.1 hypothetical protein [Lentisphaeria bacterium] diamond 153 107 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31991811 31991811 PRJNA940501_S_NODE_40018_length_301_cov_2.348837_g39200_i0 PRJNA940501 40018 301 2.348837 7.06999937 Bacteria 2 Bacteria Bacteria 47 0.00238   NR MBE6385847.1 1932692 g39200 i0 35.7 1.3953488372093 70 41 69.8 1 221 12 592 657 MBE6385847.1 hypothetical protein [Lentisphaerota bacterium] diamond 420 47 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32491440 32491440 PRJNA940501_S_NODE_223539_length_186_cov_1.139860_g222721_i0 PRJNA940501 223539 186 1.13986 2.1201396 Lentisphaeria bacterium 2053569 Bacteria Bacteria 43.5 0.00938   NR MBN2451684.1 2053569 g222721 i0 54.5 1.08064516129032 33 15 53.2 0 3 101 596 628 MBN2451684.1 NPCBM/NEW2 domain-containing protein [Lentisphaeria bacterium] diamond 201 43.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;