RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA940501" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA940501 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26645079 26645079 PRJNA940501_S_NODE_10801_length_453_cov_7.760976_g9998_i0 PRJNA940501 10801 453 7.760976 35.15722128 Fidelibacterota bacterium 2026760 Bacteria Bacteria 105 1.43e-24   NR MCJ7802071.1 2026760 g9998 i0 48.1 0.701986754966887 106 53 68.9 2 451 140 164 269 MCJ7802071.1 lipase family protein [Fidelibacterota bacterium] diamond 318 105 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
30688567 30688567 PRJNA940501_S_NODE_277013_length_172_cov_1.713178_g276195_i0 PRJNA940501 277013 172 1.713178 2.94666616 Fidelibacterota bacterium 2026760 Bacteria Bacteria 41.6 0.038   NR MAZ60767.1 2026760 g276195 i0 47.2 0.627906976744186 36 19 62.8 0 169 62 396 431 MAZ60767.1 peptidase [Fidelibacterota bacterium] diamond 108 41.6 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
30846726 30846726 PRJNA940501_S_NODE_379734_length_152_cov_1.724771_g378916_i0 PRJNA940501 379734 152 1.724771 2.62165192 Fidelibacterota bacterium 2026760 Bacteria Bacteria 41.2 0.038   NR MCH7575358.1 2026760 g378916 i0 64.3 0.552631578947368 28 10 55.3 0 112 29 239 266 MCH7575358.1 M20/M25/M40 family metallo-hydrolase [Fidelibacterota bacterium] diamond 84 41.2 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;