RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA940501", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA940501 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27815153 27815153 PRJNA940501_S_NODE_272684_length_173_cov_1.661538_g271866_i0 PRJNA940501 272684 173 1.661538 2.87446074 Thermoplasmatota archaeon 2806419 Archaea Archaea 39.7 0.0449   NR MCL4325421.1 2806419 g271866 i0 36.7 0.84971098265896 49 30 85 1 159 13 7 54 MCL4325421.1 helix-turn-helix domain-containing protein [Thermoplasmatota archaeon] diamond 147 39.7 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
31074766 31074766 PRJNA940501_S_NODE_111095_length_231_cov_1.489362_g110277_i0 PRJNA940501 111095 231 1.489362 3.44042622 root 1 Root_unresolved Root_unresolved 47.4 7.5e-4   NR MEM4728511.1 1906666 g110277 i0 46.5 3.22077922077922 43 22 55.8 1 59 187 168 209 MEM4728511.1 putative Ig domain-containing protein [Thermoplasmata archaeon] diamond 744 47.8 0.99163179916318 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;