RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA940501", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 8 ✖

tax_kingdom 1

  • Fungi · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA940501 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4746403 4746403 PRJNA940501_S_NODE_13724_length_412_cov_5.552846_g12912_i0 PRJNA940501 13724 412 5.552846 22.87772552 Paraphysoderma sedebokerense 1500003 Fungi Fungi 151 2.3899999999999993e-43   NR KAI9140816.1 1500003 g12912 i0 64.4 1.56553398058252 104 35 74.3 1 2 307 92 195 KAI9140816.1 superoxide dismutase [Paraphysoderma sedebokerense] diamond 645 151 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
26930305 26930305 PRJNA940501_S_NODE_262122_length_176_cov_1.060150_g261304_i0 PRJNA940501 262122 176 1.06015 1.865864 Catenaria anguillulae PL171 765915 Fungi Fungi 79.3 1.9e-15   NR ORZ34106.1 765915 g261304 i0 62.1 1.97727272727273 58 21 98.9 1 175 2 704 760 ORZ34106.1 Lon protease C-terminal proteolytic domain-domain-containing protein [Catenaria anguillulae PL171] diamond 348 79.3 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae
27758940 27758940 PRJNA940501_S_NODE_167004_length_204_cov_2.434783_g166186_i0 PRJNA940501 167004 204 2.434783 4.96695732 Blastocladiella 4807 Fungi Fungi 50.8 1.17e-5   NR KAI9224125.1 64508 g166186 i0 58.5 1.19117647058824 41 17 60.3 0 203 81 101 141 KAI9224125.1 ribosomal protein S19 [Blastocladiella britannica] diamond 243 50.8 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
28036043 28036043 PRJNA940501_S_NODE_22945_length_349_cov_3.081699_g22127_i0 PRJNA940501 22945 349 3.081699 10.75512951 Blastocladiella emersonii ATCC 22665 1313167 Fungi Fungi 53.1 2.74e-5   NR KAI9175326.1 1313167 g22127 i0 49 0.438395415472779 51 26 43.8 0 257 105 662 712 KAI9175326.1 ATP-dependent DNA helicase II subunit 1 [Blastocladiella emersonii ATCC 22665] diamond 153 53.1 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
29021948 29021948 PRJNA940501_S_NODE_212288_length_189_cov_1.609589_g211470_i0 PRJNA940501 212288 189 1.609589 3.04212321 Fungi 4751 Fungi Fungi 45.4 0.00195   NR KAJ3347858.1 64505 g211470 i0 64.3 3.17460317460317 28 10 44.4 0 95 12 295 322 KAJ3347858.1 Cullin-4A [Allomyces javanicus] diamond 600 45.4 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus
30310046 30310046 PRJNA940501_S_NODE_19432_length_366_cov_5.256966_g18614_i0 PRJNA940501 19432 366 5.256966 19.24049556 Allomyces arbusculus 64504 Fungi Fungi 150 5.78e-44   NR KAJ3373363.1 64504 g18614 i0 73 2.4672131147541 100 27 82 0 4 303 32 131 KAJ3373363.1 60S ribosomal protein L32 [Allomyces arbusculus] diamond 903 150 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces arbusculus
31731809 31731809 PRJNA940501_S_NODE_332177_length_161_cov_1.194915_g331359_i0 PRJNA940501 332177 161 1.194915 1.92381315 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 88.2 8.71e-19   NR KNE69722.1 578462 g331359 i0 81.1 0.987577639751553 53 10 98.8 0 3 161 41 93 KNE69722.1 cytoplasmic tRNA 2-thiolation protein 1 [Allomyces macrogynus ATCC 38327] diamond 159 88.2 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
31763506 31763506 PRJNA940501_S_NODE_127577_length_222_cov_1.575419_g126759_i0 PRJNA940501 127577 222 1.575419 3.49743018 Catenaria anguillulae PL171 765915 Fungi Fungi 57 2.41e-7   NR ORZ37065.1 765915 g126759 i0 64.1 1.66216216216216 39 14 52.7 0 3 119 291 329 ORZ37065.1 malate dehydrogenase [Catenaria anguillulae PL171] diamond 369 57 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;