RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA940501", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 7 ✖

tax_kingdom 1

  • Bacillati · 7 ✖

bioproject 1

  • PRJNA940501 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26835472 26835472 PRJNA940501_S_NODE_335661_length_160_cov_1.589744_g334843_i0 PRJNA940501 335661 160 1.589744 2.5435904 Armatimonadota bacterium 2033014 Bacteria Bacteria 44.7 4.54e-4   NR HET6456079.1 2033014 g334843 i0 55.6 0.675 36 16 67.5 0 155 48 38 73 HET6456079.1 helix-turn-helix domain-containing protein [Armatimonadota bacterium] diamond 108 44.7 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
26867222 26867222 PRJNA940501_S_NODE_68381_length_263_cov_1.922727_g67563_i0 PRJNA940501 68381 263 1.922727 5.05677201 Armatimonadota bacterium 2033014 Bacteria Bacteria 89.4 7.92e-19   NR MES2459662.1 2033014 g67563 i0 50.6 1.90494296577947 83 41 94.7 0 257 9 253 335 MES2459662.1 Gfo/Idh/MocA family oxidoreductase [Armatimonadota bacterium] diamond 501 89.4 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27562082 27562082 PRJNA940501_S_NODE_278224_length_172_cov_1.341085_g277406_i0 PRJNA940501 278224 172 1.341085 2.3066662 Armatimonadota bacterium 2033014 Bacteria Bacteria 43.1 0.0102   NR MDH7569714.1 2033014 g277406 i0 51.3 0.680232558139535 39 14 59.3 2 38 139 199 237 MDH7569714.1 cytochrome c biogenesis protein CcsA [Armatimonadota bacterium] diamond 117 43.1 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27972786 27972786 PRJNA940501_S_NODE_146225_length_213_cov_1.658824_g145407_i0 PRJNA940501 146225 213 1.658824 3.53329512 Armatimonadota bacterium 2033014 Bacteria Bacteria 44.3 0.0069   NR MFO7945492.1 2033014 g145407 i0 43.8 0.676056338028169 48 24 63.4 1 26 160 282 329 MFO7945492.1 heparinase II/III family protein [Armatimonadota bacterium] diamond 144 44.3 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28824988 28824988 PRJNA940501_S_NODE_108008_length_233_cov_1.236842_g107190_i0 PRJNA940501 108008 233 1.236842 2.88184186 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 43.9 0.013   NR HZO88550.1 2739509 g107190 i0 44.4 1.63519313304721 54 24 61.8 1 64 207 74 127 HZO88550.1 efflux RND transporter permease subunit [Chthonomonadaceae bacterium] diamond 381 43.9 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
30530598 30530598 PRJNA940501_S_NODE_121833_length_225_cov_1.549451_g121015_i0 PRJNA940501 121833 225 1.549451 3.48626475 Chthonomonadales bacterium 2282151 Bacteria Bacteria 43.1 0.0224   NR MCW3052610.1 2282151 g121015 i0 37.3 0.68 51 31 66.7 1 213 64 524 574 MCW3052610.1 mucD 8 [Chthonomonadales bacterium] diamond 153 43.1 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales     Chthonomonadales bacterium
32206541 32206541 PRJNA940501_S_NODE_186418_length_197_cov_2.402597_g185600_i0 PRJNA940501 186418 197 2.402597 4.73311609 Armatimonadota bacterium 2033014 Bacteria Bacteria 61.6 4.37e-9   NR MEY4914705.1 2033014 g185600 i0 52.8 1.61421319796954 53 23 80.7 1 170 12 338 388 MEY4914705.1 hypothetical protein [Armatimonadota bacterium] diamond 318 61.6 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;