RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA940501", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA940501 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18773535 18773535 PRJNA940501_S_NODE_67055_length_264_cov_3.307692_g66237_i0 PRJNA940501 67055 264 3.307692 8.73230688 uncultured delta proteobacterium 34034 Bacteria Bacteria 52.8 0.024   NTclustered gi|2874253659|emb|OY969087.1| 34034 g66237 i0 100 0.106060606060606 28 0 11 0 183 210 3776107 3776134 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27088563 27088563 PRJNA940501_S_NODE_391522_length_151_cov_0.870370_g390704_i0 PRJNA940501 391522 151 0.87037 1.3142587 uncultured delta proteobacterium HF 34034 Bacteria Bacteria 57 1.25e-8   NR ADI18196.1 710833 g390704 i0 65.9 2.40397350993377 41 14 81.5 0 3 125 85 125 ADI18196.1 hypothetical protein [uncultured delta proteobacterium HF0200_39N20] diamond 363 57 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0200_39N20
29740703 29740703 PRJNA940501_S_NODE_70350_length_261_cov_2.045872_g69532_i0 PRJNA940501 70350 261 2.045872 5.33972592 Bradymonadales bacterium 2099667 Bacteria Bacteria 42.7 0.0462   NR MFA5624636.1 2099667 g69532 i0 35.3 0.586206896551724 51 33 58.6 0 161 9 43 93 MFA5624636.1 hypothetical protein [Bradymonadales bacterium] diamond 153 42.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
30310059 30310059 PRJNA940501_S_NODE_273112_length_173_cov_1.446154_g272294_i0 PRJNA940501 273112 173 1.446154 2.50184642 Deltaproteobacteria bacterium RBG_13_52_11b 1797830 Bacteria Bacteria 43.1 0.00985   NR OGP53924.1 1797830 g272294 i0 74.1 1.33526011560694 27 7 46.8 0 172 92 214 240 OGP53924.1 MAG: hypothetical protein A2162_03875 [Deltaproteobacteria bacterium RBG_13_52_11b] diamond 231 43.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_52_11b

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;