RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA940501", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA940501 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28256790 28256790 PRJNA940501_S_NODE_205286_length_191_cov_1.905405_g204468_i0 PRJNA940501 205286 191 1.905405 3.63932355 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 39.3 0.0441   NR MBL7130426.1 2035772 g204468 i0 26.1 0.722513089005236 46 34 72.3 0 154 17 4 49 MBL7130426.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 138 39.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28983387 28983387 PRJNA940501_S_NODE_111948_length_230_cov_2.588235_g111130_i0 PRJNA940501 111948 230 2.588235 5.9529405 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 41.6 0.0386   NR MFA5008929.1 2035772 g111130 i0 53.6 0.365217391304348 28 13 36.5 0 71 154 18 45 MFA5008929.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 84 41.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30088364 30088364 PRJNA940501_S_NODE_383432_length_152_cov_1.027523_g382614_i0 PRJNA940501 383432 152 1.027523 1.56183496 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 41.6 0.0278   NR MDD4910363.1 2035772 g382614 i0 46.7 0.592105263157895 30 16 59.2 0 22 111 104 133 MDD4910363.1 glycosyltransferase family 39 protein [Candidatus Omnitrophota bacterium] diamond 90 41.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32301806 32301806 PRJNA940501_S_NODE_61299_length_270_cov_4.885463_g60481_i0 PRJNA940501 61299 270 4.885463 13.1907501 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.7 0.049   NR MBI4432113.1 2035772 g60481 i0 40.5 0.466666666666667 42 23 46.7 1 166 41 224 263 MBI4432113.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 126 42.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;