RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA940501", tax_clade = "Nitrospinota/Tectimicrobiota group" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Nitrospinota/Tectimicrobiota group · 3 ✖

bioproject 1

  • PRJNA940501 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28446574 28446574 PRJNA940501_S_NODE_334806_length_160_cov_1.666667_g333988_i0 PRJNA940501 334806 160 1.666667 2.6666672 Nitrospinota bacterium 2026769 Bacteria Bacteria 41.2 0.043   NR MBI4827769.1 2026769 g333988 i0 32.7 0.91875 49 33 91.9 0 10 156 282 330 MBI4827769.1 toll/interleukin-1 receptor domain-containing protein [Nitrospinota bacterium] diamond 147 41.2 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
29235873 29235873 PRJNA940501_S_NODE_396029_length_150_cov_1.757009_g395211_i0 PRJNA940501 396029 150 1.757009 2.6355135 Nitrospinae bacterium RIFCSPLOWO2_12_FULL_47_7 1801688 Bacteria Bacteria 50.1 2.71e-5   NR OGW15605.1 1801688 g395211 i0 62.8 2.56 43 16 86 0 150 22 273 315 OGW15605.1 MAG: phosphoribosylpyrophosphate synthetase [Nitrospinae bacterium RIFCSPLOWO2_12_FULL_47_7] diamond 384 50.1 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinae bacterium RIFCSPLOWO2_12_FULL_47_7
31257425 31257425 PRJNA940501_S_NODE_133495_length_219_cov_1.602273_g132677_i0 PRJNA940501 133495 219 1.602273 3.50897787 Nitrospinota bacterium 2026769 Bacteria Bacteria 50.8 1.82e-5   NR MDA0690421.1 2026769 g132677 i0 59.5 0.506849315068493 37 15 50.7 0 5 115 143 179 MDA0690421.1 DJ-1/PfpI family protein [Nitrospinota bacterium] diamond 111 50.8 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;