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contig_metadata

11 rows where bioproject = "PRJNA940501", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 11 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 11 ✖

bioproject 1

  • PRJNA940501 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17497944 17497944 PRJNA940501_S_NODE_24214_length_344_cov_2.083056_g23396_i0 PRJNA940501 24214 344 2.083056 7.16571264 Methanocaldococcus villosus 667126 Archaea Archaea 52.8 0.033   NTclustered gi|2891703609|gb|CP178163.1| 1069083 g23396 i0 100 0.0813953488372093 28 0 8 0 135 162 242273 242246 Methanocaldococcus villosus KIN24-T80 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus villosus
21321075 21321075 PRJNA940501_S_NODE_199057_length_193_cov_1.866667_g198239_i0 PRJNA940501 199057 193 1.866667 3.60266731 Methanosphaera sp. ISO3-F5 1452353 Archaea Archaea 52.8 0.017   NTclustered gi|2695672541|gb|CP118754.2| 1452353 g198239 i0 100 0.145077720207254 28 0 15 0 110 137 141740 141713 Methanosphaera sp. ISO3-F5 plasmid pNP174, complete sequence blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. ISO3-F5
27436286 27436286 PRJNA940501_S_NODE_65823_length_266_cov_1.264574_g65005_i0 PRJNA940501 65823 266 1.264574 3.36376684 Methanosphaera sp. rholeuAM13 2666342 Archaea Archaea 42 0.0473   NR RAP54450.1 1945578 g65005 i0 34.2 0.890977443609023 79 47 83.5 1 240 19 54 132 RAP54450.1 MAG: hypothetical protein BZ137_02130 [Methanosphaera sp. rholeuAM130] diamond 237 42 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. rholeuAM130
27941323 27941323 PRJNA940501_S_NODE_322465_length_163_cov_1.108333_g321647_i0 PRJNA940501 322465 163 1.108333 1.80658279 Methanobrevibacter sp. 66852 Archaea Archaea 94.7 5.790000000000001e-21   NR MDO5827583.1 66852 g321647 i0 88.7 0.975460122699387 53 6 97.5 0 161 3 275 327 MDO5827583.1 hypothetical protein [Methanobrevibacter sp.] diamond 159 94.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28162349 28162349 PRJNA940501_S_NODE_120745_length_225_cov_3.115385_g119927_i0 PRJNA940501 120745 225 3.115385 7.00961625 Methanobrevibacter smithii 2173 Archaea Archaea 52 9.42e-6   NR WP_217423167.1 2173 g119927 i0 55.6 0.6 45 20 60 0 40 174 128 172 WP_217423167.1 hypothetical protein, partial [Methanobrevibacter smithii] diamond 135 52 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
28288357 28288357 PRJNA940501_S_NODE_133506_length_219_cov_1.602273_g132688_i0 PRJNA940501 133506 219 1.602273 3.50897787 Methanobrevibacter smithii 2173 Archaea Archaea 59.3 1.57e-8   NR WP_217423167.1 2173 g132688 i0 62.2 0.616438356164384 45 17 61.6 0 82 216 127 171 WP_217423167.1 hypothetical protein, partial [Methanobrevibacter smithii] diamond 135 59.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
29015016 29015016 PRJNA940501_S_NODE_114808_length_229_cov_1.263441_g113990_i0 PRJNA940501 114808 229 1.263441 2.89327989 Methanobrevibacter sp. 66852 Archaea Archaea 159 4.36e-44   NR MDO5827839.1 66852 g113990 i0 100 2.98689956331878 76 0 99.6 0 1 228 7 82 MDO5827839.1 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase [Methanobrevibacter sp.] diamond 684 159 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29046443 29046443 PRJNA940501_S_NODE_62108_length_270_cov_1.035242_g61290_i0 PRJNA940501 62108 270 1.035242 2.7951534 Methanobacterium sp. 2164 Archaea Archaea 154 1.69e-44   NR MCC7564358.1 2164 g61290 i0 90.6 0.944444444444444 85 8 94.4 0 256 2 124 208 MCC7564358.1 TatD family hydrolase [Methanobacterium sp.] diamond 255 154 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
30063545 30063545 PRJNA940501_S_NODE_7631_length_532_cov_2.192229_g6887_i0 PRJNA940501 7631 532 2.192229 11.66265828 root 1 Root_unresolved Root_unresolved 53.9 8.44e-5   NR WP_405271529.1 66852 g6887 i0 27.8 8.28947368421053 151 87 85.2 4 515 63 262 390 WP_405271529.1 AMP-binding protein, partial [Methanobrevibacter sp.] diamond 4410 53.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30783524 30783524 PRJNA940501_S_NODE_55914_length_277_cov_1.769231_g55096_i0 PRJNA940501 55914 277 1.769231 4.90076987 Methanobrevibacter sp. 66852 Archaea Archaea 43.1 0.0396   NR MBO7692507.1 66852 g55096 i0 59.5 0.8014440433213 37 13 40.1 1 230 120 228 262 MBO7692507.1 hypothetical protein [Methanobrevibacter sp.] diamond 222 43.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31668594 31668594 PRJNA940501_S_NODE_238377_length_182_cov_1.014388_g237559_i0 PRJNA940501 238377 182 1.014388 1.84618616 Methanobacterium sp. ACI-7 3240853 Archaea Archaea 41.6 0.0413   NR WP_414469478.1 3240853 g237559 i0 40.4 0.93956043956044 57 28 85.7 2 181 26 32 87 WP_414469478.1 radical SAM protein [Methanobacterium sp. ACI-7] diamond 171 41.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. ACI-7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;