RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA940501", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA940501 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27056917 27056917 PRJNA940501_S_NODE_85022_length_248_cov_5.721951_g84204_i0 PRJNA940501 85022 248 5.721951 14.19043848 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 79.3 6.31e-16   NR MDY0082581.1 2651163 g84204 i0 53.7 0.810483870967742 67 30 81 1 2 202 151 216 MDY0082581.1 HAD family acid phosphatase [Ignavibacteriaceae bacterium] diamond 201 79.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
28446545 28446545 PRJNA940501_S_NODE_21246_length_357_cov_1.977707_g20428_i0 PRJNA940501 21246 357 1.977707 7.06041399 Ignavibacteria bacterium 2053306 Bacteria Bacteria 56.2 2.53e-6   NR MBV6479668.1 2053306 g20428 i0 38.8 0.714285714285714 85 50 71.4 1 1 255 404 486 MBV6479668.1 Beta-barrel assembly-enhancing protease [Ignavibacteria bacterium] diamond 255 56.2 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
31264369 31264369 PRJNA940501_S_NODE_189155_length_196_cov_2.790850_g188337_i0 PRJNA940501 189155 196 2.79085 5.470066 Melioribacteraceae 1334117 Bacteria Bacteria 57 1.86e-7   NR OGV08991.1 1798448 g188337 i0 61.4 1.3469387755102 44 16 67.3 1 2 133 407 449 OGV08991.1 MAG: glucosylceramidase [Stygiobacter sp. RIFOXYB2_FULL_37_11] diamond 264 57 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae Stygiobacter Stygiobacter sp. RIFOXYB2_FULL_37_11
32586319 32586319 PRJNA940501_S_NODE_65339_length_266_cov_2.161435_g64521_i0 PRJNA940501 65339 266 2.161435 5.7494171 Ignavibacteria bacterium 2053306 Bacteria Bacteria 45.1 0.00698   NR MBK6770927.1 2053306 g64521 i0 36.1 1.37593984962406 61 39 68.8 0 250 68 175 235 MBK6770927.1 glycosyltransferase [Ignavibacteria bacterium] diamond 366 45.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;