RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA940501", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA940501 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28004613 28004613 PRJNA940501_S_NODE_213865_length_189_cov_0.965753_g213047_i0 PRJNA940501 213865 189 0.965753 1.82527317 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 41.6 0.0461   NR GMW02370.1 2030809 g213047 i0 34 0.793650793650794 50 31 79.4 1 173 24 333 380 GMW02370.1 MAG: hypothetical protein AMXMBFR84_35060 [Candidatus Hydrogenedentota bacterium] diamond 150 41.6 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31106186 31106186 PRJNA940501_S_NODE_7995_length_519_cov_11.798319_g7238_i0 PRJNA940501 7995 519 11.798319 61.23327561 Candidatus Hydrogenedens 1462415 Bacteria Bacteria 184 1.2399999999999998e-55   NR OQB33551.1 1852848 g7238 i0 69 12.5953757225434 113 35 65.3 0 6 344 80 192 OQB33551.1 MAG: putative peroxiredoxin [Candidatus Hydrogenedentes bacterium ADurb.Bin170] diamond 6537 184 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentes bacterium ADurb.Bin170
32016594 32016594 PRJNA940501_S_NODE_209218_length_190_cov_1.544218_g208400_i0 PRJNA940501 209218 190 1.544218 2.9340142 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 43.1 0.014   NR MEW5691705.1 2030809 g208400 i0 40.4 0.742105263157895 47 26 74.2 1 4 144 488 532 MEW5691705.1 cobaltochelatase subunit CobN [Candidatus Hydrogenedentota bacterium] diamond 141 43.1 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32459758 32459758 PRJNA940501_S_NODE_25699_length_338_cov_3.261017_g24881_i0 PRJNA940501 25699 338 3.261017 11.02223746 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 59.7 1.2e-7   NR HOJ32794.1 2030809 g24881 i0 29.4 0.754437869822485 85 57 75.4 1 21 275 1 82 HOJ32794.1 chromosomal replication initiator protein DnaA [Candidatus Hydrogenedentota bacterium] diamond 255 59.7 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;