contig_metadata
10 rows where bioproject = "PRJNA939415" and tax_phylum = "Rhodothermota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2190489 | 2190489 | PRJNA939415_P_NODE_20842_length_341_cov_4.414179_g20422_i0 | PRJNA939415 | 20842 | 341 | 4.414179 | 15.05235039 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 180 | 4.079999999999999e-54 | NR | WP_094551050.1 | 716817 | g20422 | i0 | 75.9 | 9.71260997067449 | 112 | 27 | 98.5 | 0 | 340 | 5 | 150 | 261 | WP_094551050.1 serine O-acetyltransferase EpsC [Rubricoccus marinus] | diamond | 3312 | 181 | 0.994475138121547 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rubricoccaceae | Rubricoccus | Rubricoccus marinus | |
| 5084545 | 5084545 | PRJNA939415_P_NODE_11044_length_468_cov_1.496203_g10626_i0 | PRJNA939415 | 11044 | 468 | 1.496203 | 7.00223004 | Rhodothermales | 1853224 | Bacteria | Bacteria | 89.8 | 3.47e-13 | NTclustered | gi|1167574847|gb|CP020382.1| | 1779382 | g10626 | i0 | 80 | 0.576923076923077 | 135 | 16 | 27 | 9 | 339 | 466 | 2387855 | 2387725 | Rhodothermaceae bacterium RA chromosome, complete genome | blastn | 270 | 89.8 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermaceae | Rhodothermaceae bacterium RA | ||
| 5084887 | 5084887 | PRJNA939415_P_NODE_57984_length_275_cov_10.529703_g57562_i0 | PRJNA939415 | 57984 | 275 | 10.529703 | 28.95668325 | Rhodothermus | 29548 | Bacteria | Bacteria | 193 | 1.43e-44 | NTclustered | gi|2844596544|gb|CP172416.1| | 29549 | g57562 | i0 | 81.513 | 5.49090909090909 | 238 | 40 | 86 | 3 | 8 | 243 | 197329 | 197564 | Rhodothermus marinus strain ISCAR-493 chromosome | blastn | 1510 | 193 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermaceae | Rhodothermus | Rhodothermus marinus | |
| 21317622 | 21317622 | PRJNA939415_P_NODE_43037_length_290_cov_3.764977_g42615_i0 | PRJNA939415 | 43037 | 290 | 3.764977 | 10.9184333 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 87.9 | 7.36e-13 | NTclustered | gi|2891482048|emb|OZ219799.1| | 2306054 | g42615 | i0 | 91.935 | 0.213793103448276 | 62 | 5 | 21 | 0 | 108 | 169 | 1327777 | 1327838 | MAG: Rhodothermales bacterium isolate da3e7c24-c5f3-4507-9669-19e8aa5a93cb genome assembly, chromosome: 1 | blastn | 62 | 87.9 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 27436139 | 27436139 | PRJNA939415_P_NODE_43523_length_290_cov_1.834101_g43101_i0 | PRJNA939415 | 43523 | 290 | 1.834101 | 5.3188929 | Rubricoccus marinus | 716817 | Bacteria | Bacteria | 95.1 | 1.91e-21 | NR | WP_094545671.1 | 716817 | g43101 | i0 | 54.8 | 0.962068965517241 | 93 | 42 | 96.2 | 0 | 282 | 4 | 28 | 120 | WP_094545671.1 LytR/AlgR family response regulator transcription factor [Rubricoccus marinus] | diamond | 279 | 95.1 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rubricoccaceae | Rubricoccus | Rubricoccus marinus | |
| 28256672 | 28256672 | PRJNA939415_P_NODE_39746_length_295_cov_2.941441_g39324_i0 | PRJNA939415 | 39746 | 295 | 2.941441 | 8.67725095 | Rhodothermales bacterium | 2306054 | Bacteria | Bacteria | 134 | 1.2699999999999998e-35 | NR | HEX7071042.1 | 2306054 | g39324 | i0 | 72.2 | 2.95932203389831 | 97 | 27 | 98.6 | 0 | 3 | 293 | 84 | 180 | HEX7071042.1 glycolate oxidase subunit GlcE [Rhodothermales bacterium] | diamond | 873 | 134 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium | |||
| 28421837 | 28421837 | PRJNA939415_P_NODE_12566_length_436_cov_5.134986_g12147_i0 | PRJNA939415 | 12566 | 436 | 5.134986 | 22.38853896 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 88.2 | 2.54e-17 | NR | WP_259125489.1 | 146919 | g12147 | i0 | 37.8 | 1.4105504587156 | 111 | 63 | 76.4 | 1 | 434 | 102 | 299 | 403 | WP_259125489.1 glycosyltransferase family 4 protein [Salinibacter ruber] | diamond | 615 | 88.6 | 0.99548532731377 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Salinibacteraceae | Salinibacter | Salinibacter ruber | |
| 31352358 | 31352358 | PRJNA939415_P_NODE_67636_length_266_cov_2.259067_g67214_i0 | PRJNA939415 | 67636 | 266 | 2.259067 | 6.00911822 | Rubrivirga sp. IMCC43871 | 3391575 | Bacteria | Bacteria | 119 | 7.949999999999998e-30 | NR | WP_412070417.1 | 3391575 | g67214 | i0 | 69 | 2.94360902255639 | 87 | 27 | 98.1 | 0 | 5 | 265 | 67 | 153 | WP_412070417.1 glycosyltransferase [Rubrivirga sp. IMCC43871] | diamond | 783 | 119 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rubricoccaceae | Rubrivirga | Rubrivirga sp. IMCC43871 | |
| 31636926 | 31636926 | PRJNA939415_P_NODE_98536_length_237_cov_2.359756_g98114_i0 | PRJNA939415 | 98536 | 237 | 2.359756 | 5.59262172 | Rubrivirga sp. IMCC452 | 1885344 | Bacteria | Bacteria | 68.2 | 1.62e-11 | NR | WP_412062145.1 | 3391614 | g98114 | i0 | 43.8 | 0.924050632911392 | 73 | 37 | 87.3 | 1 | 27 | 233 | 143 | 215 | WP_412062145.1 LytR/AlgR family response regulator transcription factor [Rubrivirga sp. IMCC45206] | diamond | 219 | 68.2 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rubricoccaceae | Rubrivirga | Rubrivirga sp. IMCC45206 | |
| 32308582 | 32308582 | PRJNA939415_P_NODE_40819_length_293_cov_3.527273_g40397_i0 | PRJNA939415 | 40819 | 293 | 3.527273 | 10.33490989 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 98.2 | 2.13e-23 | NR | MDX1531592.1 | 2306054 | g40397 | i0 | 77.6 | 2.38566552901024 | 58 | 13 | 59.4 | 0 | 177 | 4 | 1 | 58 | MDX1531592.1 large conductance mechanosensitive channel protein MscL [Rhodothermales bacterium] | diamond | 699 | 98.2 | 1 | Bacteria | FCB group | Pseudomonadati | Rhodothermota | Rhodothermia | Rhodothermales | Rhodothermales bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;