RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA939415", tax_clade = "sulfur-oxidizing symbionts" and tax_phylum = "Pseudomonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 3 ✖

bioproject 1

  • PRJNA939415 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7293045 7293045 PRJNA939415_P_NODE_12406_length_439_cov_6.281421_g11987_i0 PRJNA939415 12406 439 6.281421 27.57543819 Solemya velum gill symbiont 2340 Bacteria Bacteria 203 1.16e-58   NR OOZ46311.1 2340 g11987 i0 67.8 0.997722095671982 146 43 99.8 1 438 1 452 593 OOZ46311.1 anthranilate synthase component I [Solemya velum gill symbiont] diamond 438 203 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Solemya velum gill symbiont
21316984 21316984 PRJNA939415_P_NODE_11877_length_449_cov_4.135638_g11458_i0 PRJNA939415 11877 449 4.135638 18.56901462 Candidatus Vondammii sp. HM_W22 2687299 Bacteria Bacteria 65.8 5.59e-6   NTclustered gi|2666924061|gb|CP099567.1| 2687299 g11458 i0 93.182 0.338530066815145 44 3 10 0 382 425 490534 490491 Candidatus Vondammii sp. HM_W22 chromosome, complete genome blastn 152 65.8 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria     Candidatus Vondammii Candidatus Vondammii sp. HM_W22
21317584 21317584 PRJNA939415_P_NODE_41277_length_292_cov_4.511416_g40855_i0 PRJNA939415 41277 292 4.511416 13.17333472 endosymbiont of Ridgeia piscesae 54398 Bacteria Bacteria 114 1.2799999999999999e-28   NR WP_057955189.1 54398 g40855 i0 68.2 1.74657534246575 85 27 87.3 0 259 5 1 85 WP_057955189.1 dTDP-4-dehydrorhamnose reductase [endosymbiont of Ridgeia piscesae] diamond 510 114 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       endosymbiont of Ridgeia piscesae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;