RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA939415", tax_clade = "SAR202 cluster" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 2 ✖

bioproject 1

  • PRJNA939415 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27846221 27846221 PRJNA939415_P_NODE_24584_length_311_cov_5.218487_g24162_i0 PRJNA939415 24584 311 5.218487 16.22949457 SAR202 cluster bacterium 2030829 Bacteria Bacteria 58.5 1.78e-7   NR MBM3934323.1 2030829 g24162 i0 47.1 0.491961414790997 51 27 49.2 0 145 297 29 79 MBM3934323.1 tetratricopeptide repeat protein [SAR202 cluster bacterium] diamond 153 58.5 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
32308578 32308578 PRJNA939415_P_NODE_30639_length_310_cov_3.075949_g30217_i0 PRJNA939415 30639 310 3.075949 9.5354419 Bacteria 2 Bacteria Bacteria 47 0.00278   NR PKB66820.1 1926613 g30217 i0 32.7 3.23225806451613 113 55 98.7 3 309 4 843 945 PKB66820.1 MAG: hypothetical protein BZY81_06295 [SAR202 cluster bacterium Io17-Chloro-G4] diamond 1002 47 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium Io17-Chloro-G4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;