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contig_metadata

26 rows where bioproject = "PRJNA939415", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 26 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 26 ✖

bioproject 1

  • PRJNA939415 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3808605 3808605 PRJNA939415_P_NODE_56603_length_277_cov_2.181373_g56181_i0 PRJNA939415 56603 277 2.181373 6.04240321 Waddlia 71666 Bacteria Bacteria 76.8 1.51e-9   NTclustered gi|297375547|gb|CP001928.1| 716544 g56181 i0 92.453 26.7545126353791 53 4 19 0 82 134 1439021 1439073 Waddlia chondrophila WSU 86-1044, complete genome blastn 7411 76.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila
6019054 6019054 PRJNA939415_P_NODE_60765_length_273_cov_1.970000_g60343_i0 PRJNA939415 60765 273 1.97 5.3781 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 108 5.27e-19   NTclustered gi|2874254045|emb|OY970369.1| 305355 g60343 i0 100 3.91575091575092 58 0 21 0 1 58 779975 779918 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 1069 108 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
26803458 26803458 PRJNA939415_P_NODE_49421_length_284_cov_2.450237_g48999_i0 PRJNA939415 49421 284 2.450237 6.95867308 Parachlamydiales bacterium 2052178 Bacteria Bacteria 70.5 2.34e-12   NR MBJ7449244.1 2052178 g48999 i0 38.6 0.929577464788732 88 54 93 0 12 275 72 159 MBJ7449244.1 hypothetical protein [Parachlamydiales bacterium] diamond 264 70.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
27341387 27341387 PRJNA939415_P_NODE_97983_length_237_cov_6.353659_g97561_i0 PRJNA939415 97983 237 6.353659 15.05817183 Chlamydiales bacterium 2047757 Bacteria Bacteria 70.1 8.22e-12   NR MDR3624009.1 2047757 g97561 i0 43.4 1.92405063291139 76 43 96.2 0 237 10 563 638 MDR3624009.1 insulinase family protein [Chlamydiales bacterium] diamond 456 70.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27379913 27379913 PRJNA939415_P_NODE_59203_length_274_cov_3.786070_g58781_i0 PRJNA939415 59203 274 3.78607 10.3738318 Parachlamydiaceae 92713 Bacteria Bacteria 115 1.4e-27   NR WP_059062666.1 389348 g58781 i0 61.5 3.90875912408759 91 34 99.6 1 273 1 318 407 WP_059062666.1 type IV conjugative transfer system coupling protein TraD [Candidatus Protochlamydia naegleriophila] diamond 1071 115 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
27814983 27814983 PRJNA939415_P_NODE_106064_length_224_cov_5.529801_g105642_i0 PRJNA939415 106064 224 5.529801 12.38675424 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 69.7 3.02e-12   NR WP_059060319.1 389348 g105642 i0 62.2 1.84821428571429 45 17 60.3 0 137 3 5 49 WP_059060319.1 SDR family NAD(P)-dependent oxidoreductase [Candidatus Protochlamydia naegleriophila] diamond 414 69.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
28130719 28130719 PRJNA939415_P_NODE_67465_length_266_cov_2.782383_g67043_i0 PRJNA939415 67465 266 2.782383 7.40113878 Candidatus Protochlamydia phocaeensis 1414722 Bacteria Bacteria 142 3.6399999999999997e-40   NR WP_068471218.1 1414722 g67043 i0 76.1 1.98496240601504 88 20 98.1 1 261 1 115 202 WP_068471218.1 DsbA family protein [Candidatus Protochlamydia phocaeensis] diamond 528 142 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis
28162253 28162253 PRJNA939415_P_NODE_36785_length_298_cov_3.977778_g36363_i0 PRJNA939415 36785 298 3.977778 11.85377844 Chlamydiae bacterium CG1 2081524 Bacteria Bacteria 156 3.63e-44   NR PIS02181.1 1973936 g36363 i0 78.8 1.98322147651007 99 21 99.7 0 2 298 163 261 PIS02181.1 MAG: aminotransferase class V-fold PLP-dependent enzyme [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34] diamond 591 156 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34
28761994 28761994 PRJNA939415_P_NODE_98807_length_236_cov_4.349693_g98385_i0 PRJNA939415 98807 236 4.349693 10.26527548 Chlamydia trachomatis 813 Bacteria Bacteria 151 7.94e-44   NR CQB88612.1 813 g98385 i0 97.4 0.991525423728814 78 2 99.2 0 234 1 70 147 CQB88612.1 Uncharacterised protein [Chlamydia trachomatis] diamond 234 151 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
28800304 28800304 PRJNA939415_P_NODE_108207_length_214_cov_6.418440_g107785_i0 PRJNA939415 108207 214 6.41844 13.7354616 Candidatus Protochlamydia 282132 Bacteria Bacteria 112 8.78e-27   NR WP_213106205.1 362787 g107785 i0 77.1 3.91121495327103 70 16 98.1 0 212 3 230 299 WP_213106205.1 translation elongation factor 4 [Candidatus Protochlamydia amoebophila] diamond 837 112 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
28888296 28888296 PRJNA939415_P_NODE_91248_length_244_cov_3.473684_g90826_i0 PRJNA939415 91248 244 3.473684 8.47578896 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 82 5.38e-16   NR MBA3817192.1 2052176 g90826 i0 47.5 0.983606557377049 80 42 98.4 0 242 3 573 652 MBA3817192.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 240 82 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29141182 29141182 PRJNA939415_P_NODE_70349_length_263_cov_3.342105_g69927_i0 PRJNA939415 70349 263 3.342105 8.78973615 Chlamydiae bacterium CG1 2081524 Bacteria Bacteria 112 3.18e-27   NR PIS02461.1 1973936 g69927 i0 66.3 1.97338403041825 86 29 98.1 0 1 258 178 263 PIS02461.1 MAG: M18 family aminopeptidase [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34] diamond 519 112 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34
29204316 29204316 PRJNA939415_P_NODE_97489_length_238_cov_3.939394_g97067_i0 PRJNA939415 97489 238 3.939394 9.37575772 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 56.6 1.18e-7   NR WP_059062463.1 389348 g97067 i0 47.5 1.5 59 29 71.8 2 1 171 88 146 WP_059062463.1 disulfide bond formation protein B [Candidatus Protochlamydia naegleriophila] diamond 357 56.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
29740608 29740608 PRJNA939415_P_NODE_83730_length_250_cov_3.587571_g83308_i0 PRJNA939415 83730 250 3.587571 8.9689275 Chlamydiia bacterium 2052156 Bacteria Bacteria 58.9 6.83e-8   NR MCB1181773.1 2052156 g83308 i0 49.3 0.804 67 31 80.4 1 248 48 247 310 MCB1181773.1 IS3 family transposase [Chlamydiia bacterium] diamond 201 58.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
30025203 30025203 PRJNA939415_P_NODE_109751_length_207_cov_7.589552_g109329_i0 PRJNA939415 109751 207 7.589552 15.71037264 Chlamydiales bacterium 2047757 Bacteria Bacteria 50.1 4.4e-5   NR MDR3625037.1 2047757 g109329 i0 40.6 1 69 40 98.6 1 4 207 13 81 MDR3625037.1 LysM peptidoglycan-binding domain-containing protein [Chlamydiales bacterium] diamond 207 50.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30025236 30025236 PRJNA939415_P_NODE_29531_length_310_cov_3.324895_g29109_i0 PRJNA939415 29531 310 3.324895 10.3071745 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 81.6 1.82e-15   NR HRD56308.1 2052176 g29109 i0 38.9 2.09032258064516 113 57 97.7 1 5 307 257 369 HRD56308.1 type II secretion system protein GspD [Parachlamydiaceae bacterium] diamond 648 81.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30032136 30032136 PRJNA939415_P_NODE_74951_length_259_cov_2.145161_g74529_i0 PRJNA939415 74951 259 2.145161 5.55596699 Chlamydiia 204429 Bacteria Bacteria 147 5.28e-41   NR MDR3624062.1 2047757 g74529 i0 89.5 1.99227799227799 86 9 99.6 0 1 258 259 344 MDR3624062.1 DNA-directed RNA polymerase subunit alpha [Chlamydiales bacterium] diamond 516 147 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30214514 30214514 PRJNA939415_P_NODE_58212_length_275_cov_3.747525_g57790_i0 PRJNA939415 58212 275 3.747525 10.30569375 Chlamydiales bacterium 2047757 Bacteria Bacteria 80.9 2.19e-15   NR MFI5343001.1 2047757 g57790 i0 52.1 1.04727272727273 96 40 98.2 2 271 2 1643 1738 MFI5343001.1 alpha-2-macroglobulin [Chlamydiales bacterium] diamond 288 80.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31169255 31169255 PRJNA939415_P_NODE_70435_length_263_cov_3.021053_g70013_i0 PRJNA939415 70435 263 3.021053 7.94536939 Chlamydiia 204429 Bacteria Bacteria 114 8.39e-28   NR MDR3624088.1 2047757 g70013 i0 63.2 6.86692015209125 87 32 99.2 0 261 1 179 265 MDR3624088.1 sodium-dependent transporter [Chlamydiales bacterium] diamond 1806 114 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31257374 31257374 PRJNA939415_P_NODE_67935_length_266_cov_1.388601_g67513_i0 PRJNA939415 67935 266 1.388601 3.69367866 Parachlamydia sp. 2052048 Bacteria Bacteria 43.1 0.0366   NR PJD94528.1 2052048 g67513 i0 34.3 0.755639097744361 67 43 74.4 1 2 199 728 794 PJD94528.1 MAG: hypothetical protein CK425_11135 [Parachlamydia sp.] diamond 201 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
31320547 31320547 PRJNA939415_P_NODE_34355_length_310_cov_1.953586_g33933_i0 PRJNA939415 34355 310 1.953586 6.0561166 Chlamydiales bacterium 2047757 Bacteria Bacteria 48.1 0.00102   NR MFI5343022.1 2047757 g33933 i0 41.3 0.445161290322581 46 27 44.5 0 171 308 585 630 MFI5343022.1 hypothetical protein [Chlamydiales bacterium] diamond 138 48.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32245287 32245287 PRJNA939415_P_NODE_41778_length_292_cov_2.301370_g41356_i0 PRJNA939415 41778 292 2.30137 6.7200004 Candidatus Protochlamydia 282132 Bacteria Bacteria 105 6.21e-24   NR WP_059062465.1 389348 g41356 i0 59.1 1.94178082191781 93 37 95.5 1 2 280 676 767 WP_059062465.1 AAA family ATPase [Candidatus Protochlamydia naegleriophila] diamond 567 106 0.990566037735849 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
32523060 32523060 PRJNA939415_P_NODE_32039_length_310_cov_2.835443_g31617_i0 PRJNA939415 32039 310 2.835443 8.7898733 Chlamydiota bacterium 2081524 Bacteria Bacteria 95.1 3.26e-20   NR NGX61524.1 2081524 g31617 i0 81.6 0.474193548387097 49 9 47.4 0 148 2 163 211 NGX61524.1 4-hydroxybenzoate decarboxylase subunit C [Chlamydiota bacterium] diamond 147 95.1 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
32586218 32586218 PRJNA939415_P_NODE_85699_length_249_cov_1.380682_g85277_i0 PRJNA939415 85699 249 1.380682 3.43789818 Candidatus Protochlamydia phocaeensis 1414722 Bacteria Bacteria 124 5.889999999999999e-31   NR WP_068467969.1 1414722 g85277 i0 82.9 0.987951807228916 82 14 98.8 0 2 247 361 442 WP_068467969.1 efflux RND transporter permease subunit [Candidatus Protochlamydia phocaeensis] diamond 246 124 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis
32648642 32648642 PRJNA939415_P_NODE_67780_length_266_cov_1.865285_g67358_i0 PRJNA939415 67780 266 1.865285 4.9616581 Candidatus Protochlamydia sp. 2687294 Bacteria Bacteria 112 2.5800000000000004e-27   NR MBA2367500.1 2687294 g67358 i0 65.9 0.992481203007519 88 30 99.2 0 3 266 177 264 MBA2367500.1 branched-chain amino acid transport system II carrier protein [Candidatus Protochlamydia sp.] diamond 264 112 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp.
32655518 32655518 PRJNA939415_P_NODE_54420_length_279_cov_2.621359_g53998_i0 PRJNA939415 54420 279 2.621359 7.31359161 Chlamydiia 204429 Bacteria Bacteria 155 5.18e-43   NR WP_079992903.1 389348 g53998 i0 76.8 9.05376344086022 95 19 98.9 1 2 277 214 308 WP_079992903.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit F [Candidatus Protochlamydia naegleriophila] diamond 2526 156 0.993589743589744 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;