RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA939415", tax_clade = "Nitrospinota/Tectimicrobiota group" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Nitrospinota/Tectimicrobiota group · 3 ✖

bioproject 1

  • PRJNA939415 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9843922 9843922 PRJNA939415_P_NODE_65188_length_268_cov_4.461538_g64766_i0 PRJNA939415 65188 268 4.461538 11.95692184 Nitrospina 35800 Bacteria Bacteria 146 1.02e-42   NR MBT5985394.1 2024844 g64766 i0 80.5 20.4738805970149 87 17 97.4 0 6 266 30 116 MBT5985394.1 peptidylprolyl isomerase [Nitrospina sp.] diamond 5487 147 0.993197278911565 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp.
26708178 26708178 PRJNA939415_P_NODE_16941_length_378_cov_3.639344_g16521_i0 PRJNA939415 16941 378 3.639344 13.75672032 Nitrospinota bacterium 2026769 Bacteria Bacteria 186 6.219999999999999e-52   NR MBI5636336.1 2026769 g16521 i0 68.3 1.94444444444444 123 39 97.6 0 374 6 849 971 MBI5636336.1 outer membrane lipoprotein-sorting protein [Nitrospinota bacterium] diamond 735 186 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
31794828 31794828 PRJNA939415_P_NODE_34637_length_309_cov_3.487288_g34215_i0 PRJNA939415 34637 309 3.487288 10.77571992 Nitrospinota bacterium 2026769 Bacteria Bacteria 79 1.19e-14   NR MCH8041837.1 2026769 g34215 i0 76.5 0.495145631067961 51 10 47.6 1 2 148 24 74 MCH8041837.1 ImmA/IrrE family metallo-endopeptidase [Nitrospinota bacterium] diamond 153 79 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;