RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA939415", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA939415 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29684314 29684314 PRJNA939415_P_NODE_59190_length_274_cov_3.855721_g58768_i0 PRJNA939415 59190 274 3.855721 10.56467554 root 1 Root_unresolved Root_unresolved 70.5 9.34e-12   NR MDI6723643.1 2164 g58768 i0 34.4 2.93430656934307 90 49 98.5 1 274 5 419 498 MDI6723643.1 hypothetical protein [Methanobacterium sp.] diamond 804 70.9 0.994358251057828 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
32206458 32206458 PRJNA939415_P_NODE_70398_length_263_cov_3.110526_g69976_i0 PRJNA939415 70398 263 3.110526 8.18068338 Methanobacterium sp. 2164 Archaea Archaea 95.5 3.63e-23   NR MEN4017834.1 2164 g69976 i0 65.7 0.798479087452472 70 24 79.8 0 15 224 49 118 MEN4017834.1 VOC family protein [Methanobacterium sp.] diamond 210 95.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
32774798 32774798 PRJNA939415_P_NODE_54740_length_279_cov_1.529126_g54318_i0 PRJNA939415 54740 279 1.529126 4.26626154 Methanobrevibacter millerae 230361 Archaea Archaea 48.9 4.03e-4   NR WP_058739066.1 230361 g54318 i0 39.1 0.741935483870968 69 41 73.1 1 241 38 253 321 WP_058739066.1 Ig-like domain repeat protein [Methanobrevibacter millerae] diamond 207 48.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;