RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA939415", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 5 ✖

tax_clade 1

  • Metamonada · 5 ✖

bioproject 1

  • PRJNA939415 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31067965 31067965 PRJNA939415_P_NODE_87355_length_247_cov_5.057471_g86933_i0 PRJNA939415 87355 247 5.057471 12.49195337 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 43.1 0.029   NR KAJ3423573.1 1746091 g86933 i0 38.2 3.30364372469636 68 36 78.9 3 6 200 751 815 KAJ3423573.1 ccr4-not transcription complex [Anaeramoeba flamelloides] diamond 816 43.1 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
31162319 31162319 PRJNA939415_P_NODE_93255_length_243_cov_0.905882_g92833_i0 PRJNA939415 93255 243 0.905882 2.20129326 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 82.8 1.28e-16   NR XP_001307871.1 412133 g92833 i0 44.9 4.90123456790123 78 43 96.3 0 2 235 156 233 XP_001307871.1 arginine omega-N asymmetric methyltransferase protein [Trichomonas vaginalis G3] diamond 1191 82.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31193746 31193746 PRJNA939415_P_NODE_56235_length_277_cov_3.514706_g55813_i0 PRJNA939415 56235 277 3.514706 9.73573562 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 48.5 5.39e-4   NR KAJ5079376.1 1746090 g55813 i0 33.8 0.833935018050541 77 42 73.6 1 2 205 1144 1220 KAJ5079376.1 no mechanoreceptor potential c isoform d-related [Anaeramoeba ignava] diamond 231 48.5 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
31794879 31794879 PRJNA939415_P_NODE_69937_length_264_cov_1.492147_g69515_i0 PRJNA939415 69937 264 1.492147 3.93926808 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 131 8.22e-35   NR KAJ3427686.1 1746091 g69515 i0 69 1.97727272727273 87 27 98.9 0 2 262 94 180 KAJ3427686.1 ribosomal protein L5-RELATED [Anaeramoeba flamelloides] diamond 522 131 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
32624260 32624260 PRJNA939415_P_NODE_71800_length_262_cov_2.169312_g71378_i0 PRJNA939415 71800 262 2.169312 5.68359744 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.8 4.22e-9   NR KAK2962110.1 2049346 g71378 i0 33.7 4.94656488549618 86 57 98.5 0 261 4 413 498 KAK2962110.1 putative DNA mismatch repair protein Msh2 [Blattamonas nauphoetae] diamond 1296 62.8 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida   Blattamonas Blattamonas nauphoetae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;