RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA939415", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA939415 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
915714 915714 PRJNA939415_P_NODE_5561_length_822_cov_6.383178_g5169_i0 PRJNA939415 5561 822 6.383178 52.46972316 Pseudomonadati 3379134 Bacteria Bacteria 418 8.38e-142   NR MFQ6674743.1 2026760 g5169 i0 72.5 21.9124087591241 273 75 99.6 0 819 1 101 373 MFQ6674743.1 fucose isomerase [Fidelibacterota bacterium] diamond 18012 418 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
26778908 26778908 PRJNA939415_P_NODE_23821_length_317_cov_2.217213_g23400_i0 PRJNA939415 23821 317 2.217213 7.02856521 Bacteria 2 Bacteria Bacteria 161 2.3199999999999997e-48   NR MBT3997012.1 2026760 g23400 i0 73.3 3.82334384858044 101 27 95.6 0 6 308 25 125 MBT3997012.1 thioredoxin fold domain-containing protein [Fidelibacterota bacterium] diamond 1212 161 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
28035972 28035972 PRJNA939415_P_NODE_82985_length_251_cov_1.730337_g82563_i0 PRJNA939415 82985 251 1.730337 4.34314587 Fidelibacterota bacterium 2026760 Bacteria Bacteria 49.7 1.12e-4   NR MCS5616056.1 2026760 g82563 i0 46 1.1593625498008 50 25 59.8 1 234 85 188 235 MCS5616056.1 NADP-dependent oxidoreductase [Fidelibacterota bacterium] diamond 291 49.7 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
31384051 31384051 PRJNA939415_P_NODE_75116_length_259_cov_1.655914_g74694_i0 PRJNA939415 75116 259 1.655914 4.28881726 Fidelibacterota bacterium 2026760 Bacteria Bacteria 84.7 7.09e-18   NR NQV51159.1 2026760 g74694 i0 51.9 0.938223938223938 81 38 92.7 1 5 244 20 100 NQV51159.1 hypothetical protein [Fidelibacterota bacterium] diamond 243 84.7 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
31700215 31700215 PRJNA939415_P_NODE_46497_length_287_cov_2.130841_g46075_i0 PRJNA939415 46497 287 2.130841 6.11551367 Fidelibacterota bacterium 2026760 Bacteria Bacteria 56.6 8.59e-7   NR MBT4362110.1 2026760 g46075 i0 38.8 1.47386759581882 67 41 70 0 201 1 1052 1118 MBT4362110.1 DDE-type integrase/transposase/recombinase [Fidelibacterota bacterium] diamond 423 56.6 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;