RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA939415", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA939415 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27499119 27499119 PRJNA939415_P_NODE_104163_length_228_cov_3.735484_g103741_i0 PRJNA939415 104163 228 3.735484 8.51690352 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 50.4 5.85e-5   NR MCC6490361.1 2030809 g103741 i0 45 1.51315789473684 60 33 78.9 0 227 48 41 100 MCC6490361.1 tetratricopeptide repeat protein [Candidatus Hydrogenedentota bacterium] diamond 345 50.4 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
29708822 29708822 PRJNA939415_P_NODE_30790_length_310_cov_3.050633_g30368_i0 PRJNA939415 30790 310 3.050633 9.4569623 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 57 7e-7   NR MFO7774970.1 2030809 g30368 i0 51.1 0.454838709677419 47 23 45.5 0 8 148 109 155 MFO7774970.1 FAD-dependent oxidoreductase [Candidatus Hydrogenedentota bacterium] diamond 141 57 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
30436113 30436113 PRJNA939415_P_NODE_40153_length_294_cov_3.714932_g39731_i0 PRJNA939415 40153 294 3.714932 10.92190008 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 184 1.3399999999999998e-54   NR UCD58821.1 2030809 g39731 i0 85.6 0.989795918367347 97 14 99 0 3 293 7 103 UCD58821.1 MAG: glycoside hydrolase, partial [Candidatus Hydrogenedentota bacterium] diamond 291 184 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
30878121 30878121 PRJNA939415_P_NODE_35094_length_307_cov_4.760684_g34672_i0 PRJNA939415 35094 307 4.760684 14.61529988 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 68.9 5.07e-11   NR UCD56395.1 2030809 g34672 i0 65.3 0.478827361563518 49 17 47.9 0 307 161 418 466 UCD56395.1 MAG: VWA domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 147 68.9 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31668443 31668443 PRJNA939415_P_NODE_31537_length_310_cov_2.919831_g31115_i0 PRJNA939415 31537 310 2.919831 9.0514761 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 86.7 2.98e-19   NR MBL7650399.1 2030809 g31115 i0 88 0.483870967741935 50 6 48.4 0 1 150 74 123 MBL7650399.1 xylose isomerase [Candidatus Hydrogenedentota bacterium] diamond 150 86.7 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32491366 32491366 PRJNA939415_P_NODE_80099_length_254_cov_1.430939_g79677_i0 PRJNA939415 80099 254 1.430939 3.63458506 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 61.6 9.79e-9   NR HPO13718.1 2030809 g79677 i0 57.1 0.578740157480315 49 21 57.9 0 3 149 1764 1812 HPO13718.1 choice-of-anchor Q domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 147 61.6 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;