RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA939415", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 11 ✖

tax_clade 1

  • Discoba · 11 ✖

bioproject 1

  • PRJNA939415 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9843732 9843732 PRJNA939415_P_NODE_54888_length_279_cov_1.330097_g54466_i0 PRJNA939415 54888 279 1.330097 3.71097063 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 279 1.08e-70   NTclustered gi|290980060|ref|XM_002672705.1| 5762 g54466 i0 85.145 0.989247311827957 276 38 99 2 4 279 385 113 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_81126), partial mRNA blastn 276 279 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13668380 13668380 PRJNA939415_P_NODE_104551_length_227_cov_6.474026_g104129_i0 PRJNA939415 104551 227 6.474026 14.69603902 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 52.8 0.02   NTclustered gi|290982519|ref|XM_002673932.1| 5762 g104129 i0 94.286 0.154185022026432 35 1 15 1 193 226 508 474 Naegleria gruberi peptidase C2, calpain (NAEGRDRAFT_58860), partial mRNA blastn 35 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14943009 14943009 PRJNA939415_P_NODE_20592_length_343_cov_5.674074_g20172_i0 PRJNA939415 20592 343 5.674074 19.46207382 Naegleria sp. 37103 Heterolobosea other_Eukaryota 634 2.5299999999999996e-177   NTclustered gi|2651357798|gb|PP174311.1| 37103 g20172 i0 100 56.7084548104956 343 0 100 0 1 343 3030 3372 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19451 634 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
22592910 22592910 PRJNA939415_P_NODE_63018_length_271_cov_1.287879_g62596_i0 PRJNA939415 63018 271 1.287879 3.49015209 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 311 3.71e-80   NTclustered gi|290995599|ref|XM_002680325.1| 5762 g62596 i0 87.454 1.99261992619926 271 32 99 2 1 270 566 835 Naegleria gruberi ubiquinol-cytochrome c reductase iron-sulfur subunit mitochondrial precursor (NAEGRDRAFT_78817), partial mRNA blastn 540 311 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27562022 27562022 PRJNA939415_P_NODE_86744_length_248_cov_1.857143_g86322_i0 PRJNA939415 86744 248 1.857143 4.60571464 Acrasis kona 1008807 Heterolobosea other_Eukaryota 80.1 1.84e-15   NR KAL0491802.1 1008807 g86322 i0 55.2 0.701612903225806 58 26 70.2 0 246 73 309 366 KAL0491802.1 F-box/LRR-repeat protein [Acrasis kona] diamond 174 80.1 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
27751911 27751911 PRJNA939415_P_NODE_72844_length_261_cov_2.186170_g72422_i0 PRJNA939415 72844 261 2.18617 5.7059037 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 55.5 1.58e-6   NR CAG4711220.1 5763 g72422 i0 56.1 1.31034482758621 57 21 60.9 1 1 159 269 325 CAG4711220.1 unnamed protein product, partial [Naegleria fowleri] diamond 342 55.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
28414932 28414932 PRJNA939415_P_NODE_96046_length_240_cov_4.143713_g95624_i0 PRJNA939415 96046 240 4.143713 9.9449112 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 90.9 4.15e-19   NR XP_044568997.1 5763 g95624 i0 62.8 0.975 78 24 92.5 2 1 222 565 641 XP_044568997.1 uncharacterized protein FDP41_007461 [Naegleria fowleri] diamond 234 90.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
28541279 28541279 PRJNA939415_P_NODE_81127_length_253_cov_1.355556_g80705_i0 PRJNA939415 81127 253 1.355556 3.42955668 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 131 3.06e-33   NR CAG4712635.1 5763 g80705 i0 74.7 1.96837944664032 83 21 98.4 0 252 4 591 673 CAG4712635.1 unnamed protein product [Naegleria fowleri] diamond 498 131 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
30941537 30941537 PRJNA939415_P_NODE_42174_length_291_cov_4.665138_g41752_i0 PRJNA939415 42174 291 4.665138 13.57555158 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 135 5.49e-39   NR XP_002680334.1 5762 g41752 i0 66.7 0.958762886597938 93 31 95.9 0 283 5 13 105 XP_002680334.1 uncharacterized protein NAEGRDRAFT_78792 [Naegleria gruberi] diamond 279 135 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31099230 31099230 PRJNA939415_P_NODE_81015_length_253_cov_1.677778_g80593_i0 PRJNA939415 81015 253 1.677778 4.24477834 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 152 1.03e-44   NR XP_044554967.1 51637 g80593 i0 89.6 0.91304347826087 77 8 91.3 0 233 3 1 77 XP_044554967.1 uncharacterized protein C9374_009650 [Naegleria lovaniensis] diamond 231 152 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
32530016 32530016 PRJNA939415_P_NODE_86999_length_248_cov_1.320000_g86577_i0 PRJNA939415 86999 248 1.32 3.2736 Naegleria 5761 Heterolobosea other_Eukaryota 134 3.39e-34   NR XP_002671488.1 5762 g86577 i0 74.4 3.93145161290323 82 20 99.2 1 246 1 607 687 XP_002671488.1 uncharacterized protein NAEGRDRAFT_73484 [Naegleria gruberi] diamond 975 135 0.992592592592593 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;