RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA939415", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Rokuibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA939415 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2190354 2190354 PRJNA939415_P_NODE_14362_length_408_cov_5.501493_g13943_i0 PRJNA939415 14362 408 5.501493 22.44609144 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 233 6.61e-68   NR PYN95224.1 2053607 g13943 i0 85.2 3.96323529411765 135 20 99.3 0 407 3 273 407 PYN95224.1 MAG: histidine kinase, partial [Candidatus Rokuibacteriota bacterium] diamond 1617 233 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
2191089 2191089 PRJNA939415_P_NODE_52722_length_281_cov_1.562500_g52300_i0 PRJNA939415 52722 281 1.5625 4.390625 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 67.4 1.19e-10   NR MBI2878357.1 2053607 g52300 i0 57.9 0.608540925266904 57 24 60.9 0 281 111 395 451 MBI2878357.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB [Candidatus Rokuibacteriota bacterium] diamond 171 67.4 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
30253462 30253462 PRJNA939415_P_NODE_89772_length_246_cov_0.890173_g89350_i0 PRJNA939415 89772 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 58.9 7.61e-8   NR MBI4012379.1 2053607 g89350 i0 44.9 3.28048780487805 69 37 84.1 1 1 207 264 331 MBI4012379.1 GAF domain-containing protein [Candidatus Rokuibacteriota bacterium] diamond 807 59.3 0.993254637436762 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
31510639 31510639 PRJNA939415_P_NODE_95256_length_241_cov_2.232143_g94834_i0 PRJNA939415 95256 241 2.232143 5.37946463 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 87.4 7.18e-20   NR PYO57361.1 2053607 g94834 i0 68.3 0.784232365145228 63 20 78.4 0 1 189 73 135 PYO57361.1 MAG: hypothetical protein DMD83_09570 [Candidatus Rokuibacteriota bacterium] diamond 189 87.4 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;