RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA939370", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA939370 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15284091 15284091 PRJNA939370_S_NODE_2772_length_167_cov_1.262712_g2720_i0 PRJNA939370 2772 167 1.262712 2.10872904 Sorangium 39643 Bacteria Bacteria 156 1.04e-33   NTclustered gi|1566478966|gb|CP012672.1| 56 g2720 i0 84.277 433.341317365269 159 25 95 0 9 167 4330758 4330600 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 72368 156 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
16217633 16217633 PRJNA939370_S_NODE_2293_length_181_cov_1.431818_g2241_i0 PRJNA939370 2293 181 1.431818 2.59159058 Archangium violaceum 83451 Bacteria Bacteria 60.2 9.19e-5   NTclustered gi|1981856374|gb|CP069338.1| 83451 g2241 i0 77.344 0.707182320441989 128 12 70 11 51 177 443608 443719 Archangium violaceum strain SDU34 chromosome, complete genome blastn 128 60.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;