RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA939370", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA939370 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14010111 14010111 PRJNA939370_S_NODE_1131_length_262_cov_1.248826_g1079_i0 PRJNA939370 1131 262 1.248826 3.27192412 Campylobacter 194 Bacteria Bacteria 399 7.409999999999998e-107   NTclustered gi|1483583505|emb|LT631429.1| 204 g1079 i0 96.296 209.534351145038 243 9 93 0 16 258 29384 29626 Campylobacter showae genome assembly, plasmid: V blastn 54898 399 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
25482723 25482723 PRJNA939370_S_NODE_2580_length_172_cov_0.845528_g2528_i0 PRJNA939370 2580 172 0.845528 1.45430816 root 1 Root_unresolved Root_unresolved 318 1.2899999999999999e-82   NTclustered gi|1339790007|gb|CP026515.1| 210 g2528 i0 100 100 172 0 100 0 1 172 1433466 1433637 Helicobacter pylori strain dRdM2addM2 chromosome, complete genome blastn 17200 318 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;