RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA939370", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA939370 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1256163 1256163 PRJNA939370_S_NODE_3121_length_163_cov_0.894737_g3069_i0 PRJNA939370 3121 163 0.894737 1.45842131 Bdellovibrio 958 Bacteria Bacteria 285 1.23e-72   NTclustered gi|2801803968|gb|CP169237.1| 959 g3069 i0 98.16 106.822085889571 163 3 100 0 1 163 942841 943003 Bdellovibrio bacteriovorus strain Bd3 chromosome, complete genome blastn 17412 285 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
4743030 4743030 PRJNA939370_S_NODE_3044_length_164_cov_0.817391_g2992_i0 PRJNA939370 3044 164 0.817391 1.34052124 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 289 9.59e-74   NTclustered gi|1031620923|gb|KX262861.1| 239744 g2992 i0 98.765 97.0121951219512 162 2 99 0 1 162 432 593 Uncultured Bdellovibrio sp. clone 3 16S ribosomal RNA gene, partial sequence blastn 15910 289 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.
9842661 9842661 PRJNA939370_S_NODE_1788_length_204_cov_1.664516_g1736_i0 PRJNA939370 1788 204 1.664516 3.39561264 Bdellovibrio sp. NC01 2220073 Bacteria Bacteria 370 4.33e-98   NTclustered gi|1700686220|gb|CP030034.1| 2220073 g1736 i0 99.507 96.7647058823529 203 1 99 0 1 203 861863 861661 Bdellovibrio sp. NC01 chromosome, complete genome blastn 19740 370 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. NC01

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;