RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA939370", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA939370 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1256177 1256177 PRJNA939370_S_NODE_861_length_314_cov_0.966038_g809_i0 PRJNA939370 861 314 0.966038 3.03335932 Herpetosiphon 64 Bacteria Bacteria 196 1.28e-45   NTclustered gi|470482680|ref|NR_076546.1| 65 g809 i0 78.827 9.73885350318471 307 54 96 10 14 314 172 473 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 3058 196 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
8567610 8567610 PRJNA939370_S_NODE_2127_length_188_cov_1.100719_g2075_i0 PRJNA939370 2127 188 1.100719 2.06935172 Ktedonosporobacter rubrisoli 2509675 Bacteria Bacteria 211 2.51e-50   NTclustered gi|1574824432|gb|CP035758.1| 2509675 g2075 i0 88.268 31.8457446808511 179 17 94 4 13 188 4664036 4664213 Ktedonosporobacter rubrisoli strain SCAWS-G2 chromosome, complete genome blastn 5987 211 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonosporobacteraceae Ktedonosporobacter Ktedonosporobacter rubrisoli
12735549 12735549 PRJNA939370_S_NODE_2270_length_182_cov_1.541353_g2218_i0 PRJNA939370 2270 182 1.541353 2.80526246 Herpetosiphon 64 Bacteria Bacteria 298 1.8e-76   NTclustered gi|470482680|ref|NR_076546.1| 65 g2218 i0 96.154 176.730769230769 182 7 100 0 1 182 2001 2182 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 32165 298 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
15284081 15284081 PRJNA939370_S_NODE_2192_length_185_cov_1.544118_g2140_i0 PRJNA939370 2192 185 1.544118 2.8566183 Herpetosiphon 64 Bacteria Bacteria 211 2.46e-50   NTclustered gi|470482680|ref|NR_076546.1| 65 g2140 i0 92 4.86486486486486 150 12 81 0 1 150 1393 1244 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 900 211 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
22933975 22933975 PRJNA939370_S_NODE_2138_length_187_cov_1.746377_g2086_i0 PRJNA939370 2138 187 1.746377 3.26572499 Herpetosiphon 64 Bacteria Bacteria 161 2.55e-35   NTclustered gi|470482680|ref|NR_076546.1| 65 g2086 i0 84.302 4.59893048128342 172 20 90 6 1 169 183 16 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 860 161 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
25482733 25482733 PRJNA939370_S_NODE_3060_length_163_cov_2.140351_g3008_i0 PRJNA939370 3060 163 2.140351 3.48877213 Herpetosiphon 64 Bacteria Bacteria 222 9.79e-54   NTclustered gi|470482680|ref|NR_076546.1| 65 g3008 i0 91.824 27.6073619631902 159 13 98 0 1 159 2855 2697 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 4500 222 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;