RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA939370", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA939370 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13668301 13668301 PRJNA939370_S_NODE_51_length_946_cov_7.879599_g33_i0 PRJNA939370 51 946 7.879599 74.54100654 Cryptosporidium sp. 90962 SAR_Eukaryotes SAR_Eukaryotes 134 3.3200000000000004e-26   NTclustered gi|2165328180|gb|OL865400.1| 90962 g33 i0 86.777 12.7610993657505 121 14 13 2 591 710 86 205 Cryptosporidium sp. isolate PRBOV409 large subunit ribosomal RNA gene, partial sequence blastn 12072 134 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp.
16217650 16217650 PRJNA939370_S_NODE_553_length_389_cov_42.811765_g501_i0 PRJNA939370 553 389 42.811765 166.53776585 uncultured Eimeriidae 404735 SAR_Eukaryotes SAR_Eukaryotes 604 2.279999999999999e-168   NTclustered gi|134022138|gb|EF023488.1| 404735 g501 i0 94.656 100.377892030848 393 15 100 4 1 389 1271 1661 Eimeriidae environmental sample clone Amb_18S_1074 18S ribosomal RNA gene, partial sequence blastn 39047 604 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae   uncultured Eimeriidae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;