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contig_metadata

11 rows where bioproject = "PRJNA939370" and tax_clade = "Sar"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Sar · 11 ✖

bioproject 1

  • PRJNA939370 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
914619 914619 PRJNA939370_S_NODE_1941_length_196_cov_1.102041_g1889_i0 PRJNA939370 1941 196 1.102041 2.16000036 Protaspis grandis 361427 SAR_Eukaryotes SAR_Eukaryotes 180 7.45e-41   NTclustered gi|290760486|gb|GQ144689.1| 361427 g1889 i0 83.684 46.4081632653061 190 31 97 0 6 195 1805 1994 Protaspis grandis large subunit ribosomal RNA gene, partial sequence blastn 9096 180 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Protaspis Protaspis grandis
1256148 1256148 PRJNA939370_S_NODE_2001_length_193_cov_1.125000_g1949_i0 PRJNA939370 2001 193 1.125 2.17125 Chromulinaceae 98651 SAR_Eukaryotes SAR_Eukaryotes 357 3.1499999999999996e-94   NTclustered gi|161015697|gb|EF681931.1| 89044 g1949 i0 100 100 193 0 100 0 1 193 875 1067 Spumella elongata strain CCAP955/1 28S ribosomal RNA gene, partial sequence blastn 19300 357 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Spumella Spumella elongata
2190064 2190064 PRJNA939370_S_NODE_3162_length_162_cov_1.265487_g3110_i0 PRJNA939370 3162 162 1.265487 2.05008894 Paracercomonas crassicauda 466266 SAR_Eukaryotes SAR_Eukaryotes 250 4.45e-62   NTclustered gi|161015657|gb|EF666122.1| 466266 g3110 i0 94.512 101.364197530864 164 5 100 3 1 162 184 23 Cercomonas crassicauda 28S ribosomal RNA gene, partial sequence blastn 16421 250 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas crassicauda
8567601 8567601 PRJNA939370_S_NODE_1267_length_246_cov_3.624365_g1215_i0 PRJNA939370 1267 246 3.624365 8.9159379 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 444 3.14e-120   NTclustered gi|323690576|gb|GU935635.1| 88167 g1215 i0 99.187 100.955284552846 246 2 100 0 1 246 2042 1797 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 24835 444 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
10184883 10184883 PRJNA939370_S_NODE_828_length_320_cov_39.793358_g776_i0 PRJNA939370 828 320 39.793358 127.3387456 Scrippsiella 54902 SAR_Eukaryotes SAR_Eukaryotes 219 2.8e-52   NTclustered gi|1815646385|gb|MH497038.1| 106540 g776 i0 89.143 55.834375 175 19 55 0 143 317 110 284 Scrippsiella ramonii strain GeoB 398 large subunit ribosomal RNA gene, partial sequence blastn 17867 219 1 Eukaryota Sar     Dinophyceae Peridiniales Peridiniaceae Scrippsiella Scrippsiella ramonii
12393852 12393852 PRJNA939370_S_NODE_990_length_285_cov_6.067797_g938_i0 PRJNA939370 990 285 6.067797 17.29322145 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 117 9.2e-22   NTclustered gi|238617602|gb|FJ973377.1| 188950 g938 i0 84.252 26.1052631578947 127 13 44 4 3 127 2658 2779 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 7440 117 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
13668295 13668295 PRJNA939370_S_NODE_2531_length_173_cov_1.395161_g2479_i0 PRJNA939370 2531 173 1.395161 2.41362853 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 315 1.68e-81   NTclustered gi|859811083|gb|KM818001.1| 88167 g2479 i0 99.422 101.982658959538 173 1 100 0 1 173 1052 880 Poterioochromonas malhamensis strain SAG 933.1c 23S ribosomal RNA gene, partial sequence; plastid blastn 17643 315 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
13668301 13668301 PRJNA939370_S_NODE_51_length_946_cov_7.879599_g33_i0 PRJNA939370 51 946 7.879599 74.54100654 Cryptosporidium sp. 90962 SAR_Eukaryotes SAR_Eukaryotes 134 3.3200000000000004e-26   NTclustered gi|2165328180|gb|OL865400.1| 90962 g33 i0 86.777 12.7610993657505 121 14 13 2 591 710 86 205 Cryptosporidium sp. isolate PRBOV409 large subunit ribosomal RNA gene, partial sequence blastn 12072 134 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp.
16217650 16217650 PRJNA939370_S_NODE_553_length_389_cov_42.811765_g501_i0 PRJNA939370 553 389 42.811765 166.53776585 uncultured Eimeriidae 404735 SAR_Eukaryotes SAR_Eukaryotes 604 2.279999999999999e-168   NTclustered gi|134022138|gb|EF023488.1| 404735 g501 i0 94.656 100.377892030848 393 15 100 4 1 389 1271 1661 Eimeriidae environmental sample clone Amb_18S_1074 18S ribosomal RNA gene, partial sequence blastn 39047 604 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae   uncultured Eimeriidae
20041289 20041289 PRJNA939370_S_NODE_1816_length_202_cov_1.888889_g1764_i0 PRJNA939370 1816 202 1.888889 3.81555578 Chrysolepidomonas dendrolepidota 64707 SAR_Eukaryotes SAR_Eukaryotes 84.2 6.24e-12   NTclustered gi|16326553|gb|AF409121.1| 64707 g1764 i0 97.917 0.693069306930693 48 1 24 0 155 202 3852 3899 Chrysolepidomonas dendrolepidota internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 140 84.2 1 Eukaryota Sar     Chrysophyceae Chromulinales Chrysolepidomonadaceae Chrysolepidomonas Chrysolepidomonas dendrolepidota
30498998 30498998 PRJNA939370_S_NODE_2133_length_188_cov_0.985612_g2081_i0 PRJNA939370 2133 188 0.985612 1.85295056 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 52.8 1.86e-6   NR KRX06453.1 266149 g2081 i0 43.5 0.98936170212766 62 35 98.9 0 186 1 69 130 KRX06453.1 Ribosomal protein L11, N-terminal [Pseudocohnilembus persalinus] diamond 186 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;