RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA939370", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA939370 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8567613 8567613 PRJNA939370_S_NODE_2287_length_181_cov_2.037879_g2235_i0 PRJNA939370 2287 181 2.037879 3.68856099 Opitutus sp. VeGlc2 134634 Bacteria Bacteria 268 1.3999999999999999e-67   NTclustered gi|164510706|emb|AJ966885.1| 134634 g2235 i0 93.37 143.911602209945 181 12 100 0 1 181 2690 2510 Opitutus sp. VeGlc2 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 11246 blastn 26048 268 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. VeGlc2
9842671 9842671 PRJNA939370_S_NODE_2548_length_173_cov_0.862903_g2496_i0 PRJNA939370 2548 173 0.862903 1.49282219 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 285 1.32e-72   NTclustered gi|2874254065|emb|OY970130.1| 412056 g2496 i0 97.041 77.1156069364162 169 5 98 0 5 173 5153560 5153392 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 13341 285 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
11118334 11118334 PRJNA939370_S_NODE_889_length_307_cov_1.360465_g837_i0 PRJNA939370 889 307 1.360465 4.17662755 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 385 2.49e-102   NTclustered gi|2874253690|emb|OY969416.1| 412056 g837 i0 89.508 74.2052117263844 305 30 99 2 4 307 1315949 1316252 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 22781 385 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
14942573 14942573 PRJNA939370_S_NODE_1732_length_208_cov_0.949686_g1680_i0 PRJNA939370 1732 208 0.949686 1.97534688 Nibricoccus sp. IMCC34717 3034021 Bacteria Bacteria 329 7.52e-86   NTclustered gi|2850969968|gb|CP119759.1| 3034021 g1680 i0 95.192 88.6538461538462 208 10 100 0 1 208 1404229 1404436 Nibricoccus sp. IMCC34717 chromosome, complete genome blastn 18440 329 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus sp. IMCC34717
19107547 19107547 PRJNA939370_S_NODE_3275_length_161_cov_0.991071_g3223_i0 PRJNA939370 3275 161 0.991071 1.59562431 Verrucomicrobiota 74201 Bacteria Bacteria 202 1.26e-47   NTclustered gi|164510706|emb|AJ966885.1| 134634 g3223 i0 89.873 31.1366459627329 158 14 98 2 3 160 3646 3801 Opitutus sp. VeGlc2 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 11246 blastn 5013 202 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. VeGlc2
21316745 21316745 PRJNA939370_S_NODE_2397_length_177_cov_0.960938_g2345_i0 PRJNA939370 2397 177 0.960938 1.70086026 Nibricoccus aquaticus 2576891 Bacteria Bacteria 294 2.25e-75   NTclustered gi|1243404978|gb|CP023344.1| 2576891 g2345 i0 96.61 14.5310734463277 177 6 100 0 1 177 2497126 2497302 Nibricoccus aquaticus strain HZ-65 chromosome, complete genome blastn 2572 294 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus aquaticus
32680100 32680100 PRJNA939370_S_NODE_540_length_394_cov_0.910145_g488_i0 PRJNA939370 540 394 0.910145 3.5859713 Limisphaerales bacterium 2052186 Bacteria Bacteria 48.1 0.00161   NR MFN3407990.1 2052186 g488 i0 43.6 0.418781725888325 55 28 41.1 2 225 386 90 142 MFN3407990.1 carotenoid biosynthesis protein [Limisphaerales bacterium] diamond 165 48.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales     Limisphaerales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;