RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA939370", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA939370 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5084465 5084465 PRJNA939370_S_NODE_2404_length_176_cov_7.716535_g2352_i0 PRJNA939370 2404 176 7.716535 13.5811016 Opisthokonta 33154 Fungi Fungi 182 1.82e-41   NTclustered gi|82398216|gb|DQ273778.1| 109897 g2352 i0 85.227 100.642045454545 176 26 100 0 1 176 2901 2726 Gaertneriomyces semiglobiferus isolate AFTOL-ID 34 28S ribosomal RNA gene, partial sequence blastn 17713 182 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
16558688 16558688 PRJNA939370_S_NODE_33_length_1038_cov_59.071790_g23_i0 PRJNA939370 33 1038 59.07179 613.1651802 Opisthokonta 33154 Fungi Fungi 392 5.469999999999998e-104   NTclustered gi|1866582755|gb|MT730930.1| 64517 g23 i0 82.328 50.893063583815 464 71 50 10 38 496 3753 3296 Rhizophlyctis rosea isolate KP18 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 52827 392 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;