RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA939370", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA939370 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14942578 14942578 PRJNA939370_S_NODE_2272_length_182_cov_1.255639_g2220_i0 PRJNA939370 2272 182 1.255639 2.28526298 Dipodomys spectabilis 105255 Chordata Chordata 309 8.32e-80   NTclustered gi|2072405225|ref|XR_006146613.1| 105255 g2220 i0 97.253 100.428571428571 182 5 100 0 1 182 3122 3303 PREDICTED: Dipodomys spectabilis 28S ribosomal RNA (LOC122102876), rRNA blastn 18278 309 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Heteromyidae Dipodomys Dipodomys spectabilis
21316758 21316758 PRJNA939370_S_NODE_837_length_318_cov_3.602230_g785_i0 PRJNA939370 837 318 3.60223 11.4550914 Protopterus annectens 7888 Chordata Chordata 115 3.75e-21   NTclustered gi|2118964912|ref|XR_006366892.1| 7888 g785 i0 83.607 18.0943396226415 122 20 38 0 197 318 2367 2488 PREDICTED: Protopterus annectens 28S ribosomal RNA (LOC122814694), rRNA blastn 5754 115 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
23867066 23867066 PRJNA939370_S_NODE_2199_length_185_cov_1.007353_g2147_i0 PRJNA939370 2199 185 1.007353 1.86360305 Mus musculus 10090 Chordata Chordata 342 8.369999999999999e-90   NTclustered gi|354785256|gb|JN949757.1| 10090 g2147 i0 100 109 185 0 100 0 1 185 30367 30551 Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele Tbc1d23:tm1a(KOMP)Wtsi; transgenic blastn 20165 342 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;