RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA939370", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA939370 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6360199 6360199 PRJNA939370_S_NODE_2345_length_179_cov_1.384615_g2293_i0 PRJNA939370 2345 179 1.384615 2.47846085 Naegleria 5761 Heterolobosea other_Eukaryota 287 3.82e-73   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g2293 i0 95.531 53.7765363128492 179 8 100 0 1 179 4188 4366 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 9626 287 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
14010130 14010130 PRJNA939370_S_NODE_2171_length_186_cov_1.401460_g2119_i0 PRJNA939370 2171 186 1.40146 2.6067156 Naegleria 5761 Heterolobosea other_Eukaryota 327 2.36e-85   NTclustered gi|2618963742|gb|OR769034.1| 5762 g2119 i0 98.387 33.0537634408602 186 3 100 0 1 186 3810 3625 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 6148 327 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
20382488 20382488 PRJNA939370_S_NODE_876_length_310_cov_0.984674_g824_i0 PRJNA939370 876 310 0.984674 3.0524894 Naegleria 5761 Heterolobosea other_Eukaryota 510 3.98e-140   NTclustered gi|2651357798|gb|PP174311.1| 37103 g824 i0 97.333 21.7483870967742 300 8 97 0 11 310 2709 3008 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6742 510 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
24207728 24207728 PRJNA939370_S_NODE_1839_length_201_cov_1.473684_g1787_i0 PRJNA939370 1839 201 1.473684 2.96210484 Naegleria 5761 Heterolobosea other_Eukaryota 320 4.34e-83   NTclustered gi|2651357798|gb|PP174311.1| 37103 g1787 i0 95.5 31.6069651741294 200 9 99 0 2 201 3521 3322 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6353 320 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;