RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA939370", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA939370 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7634277 7634277 PRJNA939370_S_NODE_1326_length_240_cov_2.141361_g1274_i0 PRJNA939370 1326 240 2.141361 5.1392664 Leishmania 5658 Euglenozoa other_Eukaryota 239 1.54e-58   NTclustered gi|440222381|gb|JX030049.1| 5659 g1274 i0 95.364 75.4916666666667 151 6 63 1 1 150 672 822 Leishmania amazonensis isolate LaPH8.rRNA.25 28S ribosomal RNA (LSU-beta), partial sequence blastn 18118 239 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
9842689 9842689 PRJNA939370_S_NODE_848_length_316_cov_2.966292_g796_i0 PRJNA939370 848 316 2.966292 9.37348272 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 396 1.1899999999999997e-105   NTclustered gi|2026667530|dbj|LC618030.1| 67003 g796 i0 89.198 135.835443037975 324 26 100 7 1 316 4480 4802 Trypanosoma theileri YMG-11 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, ITS5, partial and complete sequence blastn 42924 396 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
13668273 13668273 PRJNA939370_S_NODE_1251_length_248_cov_1.216080_g1199_i0 PRJNA939370 1251 248 1.21608 3.0158784 Neobodo designis 312471 Euglenozoa other_Eukaryota 396 9e-106   NTclustered gi|197723537|gb|EF681922.2| 312471 g1199 i0 95.565 157.016129032258 248 9 100 2 1 248 955 1200 Neobodo designis strain HFCC97 28S ribosomal RNA gene, partial sequence blastn 38940 396 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
20382484 20382484 PRJNA939370_S_NODE_556_length_389_cov_1.688235_g504_i0 PRJNA939370 556 389 1.688235 6.56723415 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 285 3.3699999999999995e-72   NTclustered gi|2414483|emb|Y00055.1| 5656 g504 i0 86.029 76.73264781491 272 31 69 6 80 347 7326 7058 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 29849 287 0.993031358885017 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;