RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA939370", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA939370 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8567618 8567618 PRJNA939370_S_NODE_27_length_1130_cov_6.959297_g18_i0 PRJNA939370 27 1130 6.959297 78.6400561 Tubulinea group 04 sp. P18 1215998 Tubulinea other_Eukaryota 1993 0   NTclustered gi|399764278|gb|JQ271789.1| 1215998 g18 i0 98.496 33.4938053097345 1130 17 100 0 1 1130 1141 12 Tubulinea group 04 sp. P18 18S ribosomal RNA gene, partial sequence blastn 37848 1993 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. P18
11118328 11118328 PRJNA939370_S_NODE_3369_length_156_cov_5.710280_g3317_i0 PRJNA939370 3369 156 5.71028 8.9080368 Tubulinea sp. 4790 1216002 Tubulinea other_Eukaryota 255 9.12e-64   NTclustered gi|399764273|gb|JQ271784.1| 1216002 g3317 i0 96.154 30.4935897435897 156 6 100 0 1 156 1441 1286 Tubulinea sp. 4790 18S ribosomal RNA gene, partial sequence blastn 4757 255 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4790
12393822 12393822 PRJNA939370_S_NODE_130_length_694_cov_6.254264_g91_i0 PRJNA939370 130 694 6.254264 43.40459216 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 346 2.84e-90   NTclustered gi|511487963|gb|JX898537.1| 1260765 g91 i0 83.812 24.6671469740634 383 43 53 14 262 632 376 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 17119 346 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
21316734 21316734 PRJNA939370_S_NODE_1557_length_219_cov_3.782353_g1505_i0 PRJNA939370 1557 219 3.782353 8.28335307 Tubulinea group 04 sp. P18 1215998 Tubulinea other_Eukaryota 366 6.09e-97   NTclustered gi|399764278|gb|JQ271789.1| 1215998 g1505 i0 96.847 57.1050228310502 222 1 100 6 1 219 1657 1439 Tubulinea group 04 sp. P18 18S ribosomal RNA gene, partial sequence blastn 12506 366 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. P18

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;