RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA939369" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA939369 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26708138 26708138 PRJNA939369_S_NODE_35761_length_286_cov_1.042254_g35344_i0 PRJNA939369 35761 286 1.042254 2.98084644 Phytophthora kernoviae 325452 SAR_Eukaryotes SAR_Eukaryotes 49.7 2.17e-4   NR RLN49845.1 325452 g35344 i0 49 0.513986013986014 49 25 51.4 0 12 158 521 569 RLN49845.1 hypothetical protein BBJ29_004582 [Phytophthora kernoviae] diamond 147 49.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
31011426 31011426 PRJNA939369_S_NODE_55414_length_251_cov_0.865169_g54997_i0 PRJNA939369 55414 251 0.865169 2.17157419 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 82.8 3.36e-16   NR KAF1317985.1 82926 g54997 i0 43.4 1.9840637450199201 83 47 99.2 0 250 2 858 940 KAF1317985.1 Dynein heavy chain, partial [Globisporangium splendens] diamond 498 82.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;