RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA939369", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 7 ✖

tax_phylum 1

  • Negarnaviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA939369 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1256108 1256108 PRJNA939369_S_NODE_661_length_1284_cov_12.716763_g420_i0 PRJNA939369 661 1284 12.716763 163.28323692 Deltainfluenzavirus 1511083 Viruses Viruses 2213 0   NTclustered gi|1328406500|ref|NC_036620.1| 1511083 g420 i0 99.669 93.0381619937695 1210 4 94 0 1 1210 1211 2 Influenza D virus (D/swine/Oklahoma/1334/2011) segment 6 P42 (P42) gene, complete cds blastn 119461 2224 0.995053956834532 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
3808090 3808090 PRJNA939369_S_NODE_363_length_1768_cov_25.598820_g200_i0 PRJNA939369 363 1768 25.59882 452.5871376 Deltainfluenzavirus 1511083 Viruses Viruses 3230 0   NTclustered gi|2050655392|gb|MZ264975.1| 1511083 g200 i0 99.66 98.3964932126697 1767 6 99 0 2 1768 2 1768 Influenza D virus (D/bovine/Italy/287448/2015) segment 5 nucleocapsid protein (NP) gene, complete cds blastn 173965 3241 0.99660598580685 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
5084345 5084345 PRJNA939369_S_NODE_1544_length_862_cov_34.152091_g1198_i0 PRJNA939369 1544 862 34.152091 294.39102442 Deltainfluenzavirus 1511083 Viruses Viruses 1580 0   NTclustered gi|1328406502|ref|NC_036621.1| 1511083 g1198 i0 99.768 99.1786542923434 861 2 99 0 1 861 861 1 Influenza D virus (D/swine/Oklahoma/1334/2011) segment 7 nonstructural protein 2 (NS2) and nonstructural protein 1 (NS1) genes, complete cds blastn 85492 1580 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
8908891 8908891 PRJNA939369_S_NODE_267_length_2041_cov_12.819614_g130_i0 PRJNA939369 267 2041 12.819614 261.64832174 Deltainfluenzavirus 1511083 Viruses Viruses 3716 0   NTclustered gi|1847502554|gb|MT349585.1| 1511083 g130 i0 99.51 98.5188633023028 2041 10 100 0 1 2041 2041 1 Influenza D virus (D/bovine/Italy/188812-1/2017) hemagglutinin-esterase gene, complete cds blastn 201077 3718 0.999462076385153 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
14010035 14010035 PRJNA939369_S_NODE_211_length_2346_cov_12.398592_g90_i0 PRJNA939369 211 2346 12.398592 290.87096832 Deltainfluenzavirus 1511083 Viruses Viruses 4294 0   NTclustered gi|1328406492|ref|NC_036616.1| 1511083 g90 i0 99.702 99.5618073316283 2346 7 100 0 1 2346 12 2357 Influenza D virus (D/swine/Oklahoma/1334/2011) segment 1 polymerase PB2 (PB2) gene, complete cds blastn 233572 4316 0.994902687673772 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
24207627 24207627 PRJNA939369_S_NODE_219_length_2316_cov_13.310299_g94_i0 PRJNA939369 219 2316 13.310299 308.26652484 Deltainfluenzavirus 1511083 Viruses Viruses 4261 0   NTclustered gi|1707337734|gb|MN165245.1| 1511083 g94 i0 99.87 99.5034542314335 2316 3 100 0 1 2316 2322 7 Influenza D virus (D/bovine/Italy/12002-1/2018) segment 2 polymerase PB1 (PB1) gene, complete cds blastn 230450 4272 0.997425093632959 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus
24207631 24207631 PRJNA939369_S_NODE_239_length_2188_cov_13.160757_g109_i0 PRJNA939369 239 2188 13.160757 287.95736316 Deltainfluenzavirus 1511083 Viruses Viruses 3988 0   NTclustered gi|1328406498|ref|NC_036619.1| 1511083 g109 i0 99.588 98.8423217550274 2186 9 99 0 3 2188 2 2187 Influenza D virus (D/swine/Oklahoma/1334/2011) segment 3 polymerase 3 (P3) gene, complete cds blastn 216267 4026 0.990561351217089 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Deltainfluenzavirus Deltainfluenzavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;