RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA939369" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA939369 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5084399 5084399 PRJNA939369_S_NODE_45604_length_265_cov_21.973958_g45187_i0 PRJNA939369 45604 265 21.973958 58.2309887 root 1 Root_unresolved Root_unresolved 54.7 0.007   NTclustered gi|2170965484|dbj|LC593126.1| 148819 g45187 i0 100 0.535849056603774 29 0 11 0 237 265 57 29 Anadara broughtonii GnRH mRNA for gonadotropin releasing hormone, complete cds blastn 142 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Arcoida Arcidae Anadara Anadara broughtonii
11118294 11118294 PRJNA939369_S_NODE_8369_length_451_cov_1.907407_g7952_i0 PRJNA939369 8369 451 1.907407 8.60240557 Haliotis asinina 109174 Mollusca Mollusca 52.8 0.044   NTclustered gi|2793356350|ref|XM_067826384.1| 109174 g7952 i0 100 0.124168514412417 28 0 6 0 100 127 1398 1425 PREDICTED: Haliotis asinina p53 apoptosis effector related to PMP-22-like (LOC137295088), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis asinina
16217241 16217241 PRJNA939369_S_NODE_28013_length_306_cov_16.832618_g27596_i0 PRJNA939369 28013 306 16.832618 51.50781108 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.029   NTclustered gi|2912986657|dbj|AP039591.1| 145626 g27596 i0 100 0.0915032679738562 28 0 9 0 4 31 71936218 71936245 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 10, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
23866906 23866906 PRJNA939369_S_NODE_63199_length_247_cov_0.885057_g62782_i0 PRJNA939369 63199 247 0.885057 2.18609079 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.022   NTclustered gi|2912984370|dbj|AP039589.1| 145626 g62782 i0 96.774 0.125506072874494 31 1 13 0 183 213 8756819 8756849 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 8, sequence blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;