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contig_metadata

27 rows where bioproject = "PRJNA939369" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 27 ✖

tax_clade 1

bioproject 1

  • PRJNA939369 · 27 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
914155 914155 PRJNA939369_S_NODE_13621_length_382_cov_6.699029_g13204_i0 PRJNA939369 13621 382 6.699029 25.59029078 Tetrahymena nigricans 2704176 SAR_Eukaryotes SAR_Eukaryotes 542 1.7699999999999999e-149   NTclustered gi|2082965251|gb|MZ827091.1| 2704176 g13204 i0 94.633 92.9424083769634 354 12 92 5 31 382 443 791 Tetrahymena nigricans isolate VB57 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 35504 542 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena nigricans
914273 914273 PRJNA939369_S_NODE_35921_length_285_cov_2.311321_g35504_i0 PRJNA939369 35921 285 2.311321 6.58726485 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 387 6.349999999999998e-103   NTclustered gi|161087246|gb|EU185635.1| 5932 g35504 i0 93.822 67.259649122807 259 13 90 2 7 262 2534 2276 Ichthyophthirius multifiliis 28S ribosomal RNA gene, partial sequence blastn 19169 387 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
2189670 2189670 PRJNA939369_S_NODE_31662_length_296_cov_1.372197_g31245_i0 PRJNA939369 31662 296 1.3721969999999999 4.06170312 Tetrahymena paravorax 5905 SAR_Eukaryotes SAR_Eukaryotes 484 2.2899999999999996e-132   NTclustered gi|114329857|ref|NC_008338.1| 5905 g31245 i0 97.213 10.4662162162162 287 7 100 1 11 296 2417 2131 Tetrahymena paravorax mitochondrion, complete genome blastn 3098 484 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena paravorax
4742596 4742596 PRJNA939369_S_NODE_22984_length_324_cov_1.374502_g22567_i0 PRJNA939369 22984 324 1.374502 4.45338648 Entodinium bursa 358014 SAR_Eukaryotes SAR_Eukaryotes 538 1.9199999999999998e-148   NTclustered gi|2643596935|gb|PP067607.1| 358014 g22567 i0 96.605 61.2808641975309 324 11 100 0 1 324 3946 3623 Entodinium bursa isolate 06.MDA24 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 19855 538 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Entodinium Entodinium bursa
4742684 4742684 PRJNA939369_S_NODE_35144_length_287_cov_1.570093_g34727_i0 PRJNA939369 35144 287 1.570093 4.50616691 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g34727 i0 100 0.198606271777003 29 0 10 0 1 29 9 37 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
6017814 6017814 PRJNA939369_S_NODE_78305_length_231_cov_6.525316_g77888_i0 PRJNA939369 78305 231 6.525316 15.07347996 Tetrahymena paravorax 5905 SAR_Eukaryotes SAR_Eukaryotes 381 2.3199999999999996e-101   NTclustered gi|126142780|gb|EF070253.1| 5905 g77888 i0 100 89.1774891774892 206 0 89 0 1 206 840 635 Tetrahymena paravorax strain RP 18S small subunit ribosomal RNA gene, partial sequence blastn 20600 381 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena paravorax
8567231 8567231 PRJNA939369_S_NODE_34927_length_288_cov_1.027907_g34510_i0 PRJNA939369 34927 288 1.027907 2.96037216 Entodinium caudatum 47911 SAR_Eukaryotes SAR_Eukaryotes 449 8.090000000000001e-122   NTclustered gi|3172501|gb|AF065248.1|AF065248 47911 g34510 i0 94.792 1 288 15 100 0 1 288 437 150 Entodinium caudatum centrin 2 mRNA, partial cds blastn 288 449 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Entodinium Entodinium caudatum
8908918 8908918 PRJNA939369_S_NODE_4207_length_578_cov_6.039604_g3797_i0 PRJNA939369 4207 578 6.039604 34.90891112 root 1 Root_unresolved Root_unresolved 723 0   NTclustered gi|345541658|gb|JN547815.1| 5911 g3797 i0 90.305 60.7093425605536 557 47 96 7 26 578 2193 2746 Tetrahymena thermophila strain ATCC 30382 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 35090 723 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
8908931 8908931 PRJNA939369_S_NODE_48927_length_260_cov_0.834225_g48510_i0 PRJNA939369 48927 260 0.834225 2.168985 Entodiniomorphida 40634 SAR_Eukaryotes SAR_Eukaryotes 315 2.7399999999999992e-81   NTclustered gi|2547270|gb|U57763.1|ECU57763 47887 g48510 i0 99.425 66.9230769230769 174 0 67 1 88 260 383 210 Epidinium caudatum 18S small subunit ribosomal RNA gene sequence blastn 17400 315 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Epidinium Epidinium caudatum
10184793 10184793 PRJNA939369_S_NODE_53068_length_253_cov_1.283333_g52651_i0 PRJNA939369 53068 253 1.283333 3.24683249 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 285 2.08e-72   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g52651 i0 97.59 74.3162055335968 166 4 66 0 26 191 2917 3082 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 18802 285 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
11117832 11117832 PRJNA939369_S_NODE_10709_length_414_cov_3.653959_g10292_i0 PRJNA939369 10709 414 3.653959 15.12739026 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.011   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g10292 i0 100 0.13768115942029 29 0 7 0 1 29 9 37 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
14942145 14942145 PRJNA939369_S_NODE_19492_length_340_cov_2.400749_g19075_i0 PRJNA939369 19492 340 2.400749 8.1625466 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 586 7.119999999999998e-163   NTclustered gi|2651357791|gb|PP174306.1| 41631 g19075 i0 97.935 63.3823529411765 339 6 99 1 2 340 3624 3287 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21550 586 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
16217324 16217324 PRJNA939369_S_NODE_41493_length_273_cov_9.735000_g41076_i0 PRJNA939369 41493 273 9.735 26.57655 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 405 1.67e-108   NTclustered gi|161087246|gb|EU185635.1| 5932 g41076 i0 93.455 39.9340659340659 275 15 100 3 1 273 1713 1986 Ichthyophthirius multifiliis 28S ribosomal RNA gene, partial sequence blastn 10902 405 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
16217550 16217550 PRJNA939369_S_NODE_72433_length_243_cov_0.905882_g72016_i0 PRJNA939369 72433 243 0.905882 2.20129326 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 100 2.41e-22   NR KAL4436229.1 5901 g72016 i0 63.6 5.91358024691358 77 25 91.4 1 241 20 173 249 KAL4436229.1 hypothetical protein ABPG74_015820 [Tetrahymena malaccensis] diamond 1437 100 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
17492530 17492530 PRJNA939369_S_NODE_20514_length_335_cov_1.938931_g20097_i0 PRJNA939369 20514 335 1.938931 6.49541885 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 531 3.33e-146   NTclustered gi|1389430805|gb|MH341633.1| 1938391 g20097 i0 95.224 41.1074626865672 335 16 100 0 1 335 1802 2136 Chilodonella hexasticha strain C.hexasticha AS large subunit ribosomal RNA gene, partial sequence blastn 13771 531 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
18766220 18766220 PRJNA939369_S_NODE_58475_length_249_cov_1.312500_g58058_i0 PRJNA939369 58475 249 1.3125 3.268125 Protoptychostomum simplex 2992748 SAR_Eukaryotes SAR_Eukaryotes 270 5.72e-68   NTclustered gi|2324418203|gb|OP755170.1| 2992748 g58058 i0 86.454 23.144578313253 251 28 100 5 1 249 919 1165 Protoptychostomum simplex isolate CVsk 190 ET internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5763 270 1 Eukaryota Sar   Ciliophora Oligohymenophorea   Hysterocinetidae Protoptychostomum Protoptychostomum simplex
21316492 21316492 PRJNA939369_S_NODE_50917_length_256_cov_2.273224_g50500_i0 PRJNA939369 50917 256 2.273224 5.81945344 Tetrahymena paravorax 5905 SAR_Eukaryotes SAR_Eukaryotes 429 9.2e-116   NTclustered gi|126142780|gb|EF070253.1| 5905 g50500 i0 99.574 92.9296875 235 1 92 0 22 256 1179 1413 Tetrahymena paravorax strain RP 18S small subunit ribosomal RNA gene, partial sequence blastn 23790 429 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena paravorax
21316507 21316507 PRJNA939369_S_NODE_5317_length_530_cov_8.693654_g4901_i0 PRJNA939369 5317 530 8.693654 46.0763662 Tetrahymena paravorax 5905 SAR_Eukaryotes SAR_Eukaryotes 922 0   NTclustered gi|126142780|gb|EF070253.1| 5905 g4901 i0 100 95.5188679245283 499 0 94 0 1 499 499 1 Tetrahymena paravorax strain RP 18S small subunit ribosomal RNA gene, partial sequence blastn 50625 922 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena paravorax
26803354 26803354 PRJNA939369_S_NODE_28601_length_305_cov_0.995690_g28184_i0 PRJNA939369 28601 305 0.99569 3.0368545 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 73.6 3.63e-13   NR XP_004032259.1 5932 g28184 i0 40.7 0.895081967213115 91 54 89.5 0 283 11 20 110 XP_004032259.1 hypothetical protein IMG5_126280, partial [Ichthyophthirius multifiliis] diamond 273 73.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
26842335 26842335 PRJNA939369_S_NODE_61801_length_248_cov_0.880000_g61384_i0 PRJNA939369 61801 248 0.88 2.1824 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89 4.52e-20   NR TNV75589.1 5974 g61384 i0 63.9 8.9758064516129 72 25 87.1 1 245 30 101 171 TNV75589.1 hypothetical protein FGO68_gene3445 [Halteria grandinella] diamond 2226 89 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
27909167 27909167 PRJNA939369_S_NODE_61365_length_248_cov_0.880000_g60948_i0 PRJNA939369 61365 248 0.88 2.1824 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 68.2 4.28e-11   NR CDW86847.1 5949 g60948 i0 57.5 0.967741935483871 80 34 96.8 0 247 8 334 413 CDW86847.1 UNKNOWN [Stylonychia lemnae] diamond 240 68.2 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
28635919 28635919 PRJNA939369_S_NODE_75887_length_241_cov_0.916667_g75470_i0 PRJNA939369 75887 241 0.916667 2.20916747 Paramecium octaurelia 43137 SAR_Eukaryotes SAR_Eukaryotes 52.8 9.04e-6   NR CAD8157178.1 43137 g75470 i0 39.2 0.921161825726141 74 44 90.9 1 11 229 107 180 CAD8157178.1 unnamed protein product [Paramecium octaurelia] diamond 222 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia
29614134 29614134 PRJNA939369_S_NODE_75890_length_241_cov_0.916667_g75473_i0 PRJNA939369 75890 241 0.916667 2.20916747 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.00175   NR CDW77678.1 5949 g75473 i0 41.4 0.721991701244813 58 30 72.2 1 2 175 51 104 CDW77678.1 uncharacterized protein at2g34160-like [Stylonychia lemnae] diamond 174 45.1 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32213429 32213429 PRJNA939369_S_NODE_62018_length_248_cov_0.880000_g61601_i0 PRJNA939369 62018 248 0.88 2.1824 Spirotrichea 33829 SAR_Eukaryotes SAR_Eukaryotes 107 2.3599999999999997e-25   NR CAI2368938.1 5936 g61601 i0 58 2.95161290322581 81 34 98 0 243 1 312 392 CAI2368938.1 unnamed protein product [Moneuplotes crassus] diamond 732 107 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
32269782 32269782 PRJNA939369_S_NODE_76298_length_241_cov_0.916667_g75881_i0 PRJNA939369 76298 241 0.916667 2.20916747 Philasterides dicentrarchi 282688 SAR_Eukaryotes SAR_Eukaryotes 66.2 1.91e-10   NR AWX67871.1 282688 g75881 i0 38.5 1.92946058091286 78 48 97.1 0 6 239 4099 4176 AWX67871.1 dynein heavy chain 17 [Philasterides dicentrarchi] diamond 465 66.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Philasteridae Philasterides Philasterides dicentrarchi
32427875 32427875 PRJNA939369_S_NODE_75979_length_241_cov_0.916667_g75562_i0 PRJNA939369 75979 241 0.916667 2.20916747 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 55.1 8.54e-7   NR KRX05012.1 266149 g75562 i0 42.9 0.784232365145228 63 29 78.4 2 42 230 1 56 KRX05012.1 hypothetical protein PPERSA_06646 [Pseudocohnilembus persalinus] diamond 189 55.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
32774722 32774722 PRJNA939369_S_NODE_58600_length_249_cov_1.181818_g58183_i0 PRJNA939369 58600 249 1.181818 2.94272682 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 115 5.800000000000001e-30   NR OMJ75804.1 5963 g58183 i0 63.9 2 83 30 100 0 249 1 77 159 OMJ75804.1 hypothetical protein SteCoe_24985 [Stentor coeruleus] diamond 498 115 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;