contig_metadata
12 rows where bioproject = "PRJNA939369" and tax_kingdom = "Pararnavirae"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 914544 | 914544 | PRJNA939369_S_NODE_71821_length_243_cov_0.905882_g71404_i0 | PRJNA939369 | 71821 | 243 | 0.905882 | 2.20129326 | Retrovirus rattus8197 | 3117313 | Viruses | Viruses | 425 | 1.12e-114 | NTclustered | gi|2710390889|tpg|BK066447.1| | 3117313 | g71404 | i0 | 98.347 | 1.9917695473251 | 242 | 4 | 99 | 0 | 2 | 243 | 7118 | 7359 | MAG TPA_asm: Retrovirus rattus8197 isolate Retro8197 genomic sequence | blastn | 484 | 425 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Retrovirus rattus8197 | |||
| 7292309 | 7292309 | PRJNA939369_S_NODE_10366_length_419_cov_1.445087_g9949_i0 | PRJNA939369 | 10366 | 419 | 1.445087 | 6.05491453 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 767 | 0 | NTclustered | gi|4071074|gb|AF019230.1|AF019230 | 11786 | g9949 | i0 | 99.761 | 14.673031026253 | 419 | 0 | 100 | 1 | 1 | 419 | 4577 | 4994 | Murine leukemia virus strain SRS 19-6 complete genome | blastn | 6148 | 767 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 11117933 | 11117933 | PRJNA939369_S_NODE_26009_length_313_cov_1.283333_g25592_i0 | PRJNA939369 | 26009 | 313 | 1.283333 | 4.01683229 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 566 | 8.459999999999999e-157 | NTclustered | gi|4071074|gb|AF019230.1|AF019230 | 11786 | g25592 | i0 | 99.361 | 87.849840255591 | 313 | 1 | 100 | 1 | 1 | 313 | 528 | 217 | Murine leukemia virus strain SRS 19-6 complete genome | blastn | 27497 | 566 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 12393632 | 12393632 | PRJNA939369_S_NODE_54610_length_251_cov_1.028090_g54193_i0 | PRJNA939369 | 54610 | 251 | 1.02809 | 2.5805059 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 453 | 5.34e-123 | NTclustered | gi|4071074|gb|AF019230.1|AF019230 | 11786 | g54193 | i0 | 99.203 | 19.7211155378486 | 251 | 2 | 100 | 0 | 1 | 251 | 7404 | 7654 | Murine leukemia virus strain SRS 19-6 complete genome | blastn | 4950 | 453 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 14942217 | 14942217 | PRJNA939369_S_NODE_31572_length_296_cov_2.071749_g31155_i0 | PRJNA939369 | 31572 | 296 | 2.071749 | 6.13237704 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 475 | 1.3799999999999998e-129 | NTclustered | gi|4071074|gb|AF019230.1|AF019230 | 11786 | g31155 | i0 | 100 | 83.7736486486486 | 257 | 0 | 100 | 0 | 1 | 257 | 8008 | 7752 | Murine leukemia virus strain SRS 19-6 complete genome | blastn | 24797 | 475 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 14942269 | 14942269 | PRJNA939369_S_NODE_41732_length_273_cov_1.155000_g41315_i0 | PRJNA939369 | 41732 | 273 | 1.155 | 3.15315 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 505 | 1.6e-138 | NTclustered | gi|4071074|gb|AF019230.1|AF019230 | 11786 | g41315 | i0 | 100 | 98.3882783882784 | 273 | 0 | 100 | 0 | 1 | 273 | 3915 | 3643 | Murine leukemia virus strain SRS 19-6 complete genome | blastn | 26860 | 505 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 21316419 | 21316419 | PRJNA939369_S_NODE_41117_length_274_cov_1.532338_g40700_i0 | PRJNA939369 | 41117 | 274 | 1.532338 | 4.19860612 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 507 | 4.47e-139 | NTclustered | gi|378404894|dbj|AB187566.2| | 11786 | g40700 | i0 | 100 | 95.3394160583942 | 274 | 0 | 100 | 0 | 1 | 274 | 4574 | 4301 | Murine leukemia virus Graffi GV-1.4 DNA, complete genome | blastn | 26123 | 507 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 23866719 | 23866719 | PRJNA939369_S_NODE_37379_length_282_cov_1.315789_g36962_i0 | PRJNA939369 | 37379 | 282 | 1.315789 | 3.71052498 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 521 | 1.6499999999999996e-143 | NTclustered | gi|4071074|gb|AF019230.1|AF019230 | 11786 | g36962 | i0 | 100 | 16.2021276595745 | 282 | 0 | 100 | 0 | 1 | 282 | 1868 | 2149 | Murine leukemia virus strain SRS 19-6 complete genome | blastn | 4569 | 521 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 25140391 | 25140391 | PRJNA939369_S_NODE_22080_length_328_cov_1.325490_g21663_i0 | PRJNA939369 | 22080 | 328 | 1.32549 | 4.3476072 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 606 | 5.249999999999998e-169 | NTclustered | gi|4071074|gb|AF019230.1|AF019230 | 11786 | g21663 | i0 | 100 | 24.8719512195122 | 328 | 0 | 100 | 0 | 1 | 328 | 6445 | 6772 | Murine leukemia virus strain SRS 19-6 complete genome | blastn | 8158 | 606 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 26866994 | 26866994 | PRJNA939369_S_NODE_22901_length_324_cov_5.541833_g22484_i0 | PRJNA939369 | 22901 | 324 | 5.541833 | 17.95553892 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 224 | 3.81e-69 | NR | 8WUS_E | 11801 | g22484 | i0 | 100 | 7.92592592592593 | 107 | 0 | 99.1 | 0 | 2 | 322 | 152 | 258 | 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] | diamond | 2568 | 224 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 29740478 | 29740478 | PRJNA939369_S_NODE_2990_length_660_cov_3.524702_g2593_i0 | PRJNA939369 | 2990 | 660 | 3.524702 | 23.2630332 | Moloney murine leukemia virus | 11801 | Viruses | Viruses | 424 | 2.89e-134 | NR | NP_057933.2 | 11801 | g2593 | i0 | 98.2 | 0.995454545454545 | 219 | 4 | 99.5 | 0 | 2 | 658 | 1111 | 1329 | NP_057933.2 Pr180 [Moloney murine leukemia virus] | diamond | 657 | 424 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 32648556 | 32648556 | PRJNA939369_S_NODE_78460_length_230_cov_3.605096_g78043_i0 | PRJNA939369 | 78460 | 230 | 3.605096 | 8.2917208 | Gammaretrovirus murleu | 3428959 | Viruses | Viruses | 154 | 1.1899999999999997e-42 | NR | 8WUS_E | 11801 | g78043 | i0 | 98.7 | 5.94782608695652 | 76 | 1 | 99.1 | 0 | 2 | 229 | 252 | 327 | 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] | diamond | 1368 | 154 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;