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contig_metadata

8 rows where bioproject = "PRJNA939369", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 8 ✖

bioproject 1

  • PRJNA939369 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2189535 2189535 PRJNA939369_S_NODE_10902_length_412_cov_1.902655_g10485_i0 PRJNA939369 10902 412 1.902655 7.8389386 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.04   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10485 i0 100 0.0679611650485437 28 0 7 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
20382433 20382433 PRJNA939369_S_NODE_72896_length_242_cov_2.278107_g72479_i0 PRJNA939369 72896 242 2.278107 5.51301894 Onchocercidae 6296 Nematoda Nematoda 128 3.52e-25   NTclustered gi|1158605395|ref|XR_002251420.1| 7209 g72479 i0 96.154 23.6528925619835 78 3 32 0 1 78 2912 2989 Loa loa 28S ribosomal RNA rRNA blastn 5724 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
22591209 22591209 PRJNA939369_S_NODE_10398_length_418_cov_8.881159_g9981_i0 PRJNA939369 10398 418 8.881159 37.12324462 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.04   NTclustered gi|1557394408|emb|LR031564.1| 45931 g9981 i0 100 0.0669856459330144 28 0 7 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26993106 26993106 PRJNA939369_S_NODE_68002_length_245_cov_0.895349_g67585_i0 PRJNA939369 68002 245 0.895349 2.19360505 Cylicocyclus nassatus 53992 Nematoda Nematoda 75.5 1.85e-14   NR CAJ0610677.1 53992 g67585 i0 56.7 0.820408163265306 67 27 79.6 1 245 51 40 106 CAJ0610677.1 unnamed protein product, partial [Cylicocyclus nassatus] diamond 201 75.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
27056708 27056708 PRJNA939369_S_NODE_74002_length_242_cov_0.911243_g73585_i0 PRJNA939369 74002 242 0.911243 2.20520806 Cylicocyclus nassatus 53992 Nematoda Nematoda 126 3.4799999999999996e-32   NR CAJ0600783.1 53992 g73585 i0 76.3 0.991735537190083 80 19 99.2 0 241 2 360 439 CAJ0600783.1 unnamed protein product [Cylicocyclus nassatus] diamond 240 126 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
31352237 31352237 PRJNA939369_S_NODE_16636_length_358_cov_0.992982_g16219_i0 PRJNA939369 16636 358 0.992982 3.55487556 Cylicocyclus nassatus 53992 Nematoda Nematoda 94 2.31e-20   NR CAJ0610616.1 53992 g16219 i0 60.3 1.26536312849162 68 27 57 0 318 115 144 211 CAJ0610616.1 unnamed protein product [Cylicocyclus nassatus] diamond 453 94 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
31390959 31390959 PRJNA939369_S_NODE_64116_length_247_cov_0.885057_g63699_i0 PRJNA939369 64116 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 144 9.17e-38   NR CAJ0592246.1 53992 g63699 i0 80 8.74493927125506 80 16 97.2 0 7 246 486 565 CAJ0592246.1 unnamed protein product [Cylicocyclus nassatus] diamond 2160 145 0.993103448275862 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
32023529 32023529 PRJNA939369_S_NODE_50738_length_257_cov_1.010870_g50321_i0 PRJNA939369 50738 257 1.01087 2.5979359 root 1 Root_unresolved Root_unresolved 121 1.07e-29   NR CAJ0592246.1 53992 g50321 i0 78.5 2.77821011673152 79 17 92.2 0 239 3 342 420 CAJ0592246.1 unnamed protein product [Cylicocyclus nassatus] diamond 714 121 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;