RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA939369", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA939369 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11459911 11459911 PRJNA939369_S_NODE_7249_length_475_cov_1.097015_g6832_i0 PRJNA939369 7249 475 1.097015 5.21082125 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 56.6 5.99e-6   NR MBK6494918.1 2026742 g6832 i0 42.2 0.404210526315789 64 36 40.4 1 439 248 39 101 MBK6494918.1 AAA family ATPase [Gemmatimonadota bacterium] diamond 192 56.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27561915 27561915 PRJNA939369_S_NODE_65924_length_246_cov_0.890173_g65507_i0 PRJNA939369 65924 246 0.890173 2.18982558 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.1 0.0281   NR MEX1051502.1 2448054 g65507 i0 50 0.926829268292683 38 18 46.3 1 186 73 186 222 MEX1051502.1 hypothetical protein [Gemmatimonadales bacterium] diamond 228 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28193442 28193442 PRJNA939369_S_NODE_77186_length_240_cov_2.377246_g76769_i0 PRJNA939369 77186 240 2.377246 5.7053904 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.1 0.00338   NR MDZ7778740.1 2026742 g76769 i0 89.5 3.225 19 2 23.8 0 184 240 1 19 MDZ7778740.1 cold-shock protein [Gemmatimonadota bacterium] diamond 774 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;