RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA938397", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA938397 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8908825 8908825 PRJNA938397_S_NODE_42287_length_169_cov_1.977273_g42046_i0 PRJNA938397 42287 169 1.977273 3.34159137 Treponema 157 Bacteria Bacteria 169 1.34e-37   NTclustered gi|1928027651|gb|CP061839.1| 409322 g42046 i0 86.842 167.094674556213 152 18 100 2 1 151 387849 387999 Treponema pedis strain KS1 chromosome, complete genome blastn 28239 169 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema pedis
32648537 32648537 PRJNA938397_S_NODE_23280_length_229_cov_5.005208_g23039_i0 PRJNA938397 23280 229 5.005208 11.46192632 Leptospiraceae bacterium 2026757 Bacteria Bacteria 46.2 0.00184   NR MCB1199648.1 2026757 g23039 i0 56.4 0.510917030567686 39 17 51.1 0 8 124 374 412 MCB1199648.1 FAD-dependent oxidoreductase [Leptospiraceae bacterium] diamond 117 46.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;