RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA938397", tax_phylum = "Nitrospirota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 5 ✖

tax_phylum 1

  • Nitrospirota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA938397 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
912750 912750 PRJNA938397_S_NODE_21961_length_235_cov_504.676768_g21720_i0 PRJNA938397 21961 235 504.676768 1185.9904048 Nitrospira sp. 70125 Bacteria Bacteria 73.1 1.62e-8   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g21720 i0 97.619 17.131914893617 42 1 18 0 194 235 406648 406607 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 4026 73.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
21315180 21315180 PRJNA938397_S_NODE_30837_length_198_cov_616.968944_g30596_i0 PRJNA938397 30837 198 616.968944 1221.59850912 Nitrospira sp. 70125 Bacteria Bacteria 73.1 1.32e-8   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g30596 i0 97.619 20.3333333333333 42 1 21 0 1 42 406607 406648 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 4026 73.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
21316193 21316193 PRJNA938397_S_NODE_9297_length_344_cov_346.703583_g9056_i0 PRJNA938397 9297 344 346.703583 1192.66032552 Nitrospira sp. 70125 Bacteria Bacteria 73.1 2.5e-8   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g9056 i0 97.619 11.703488372093 42 1 12 0 1 42 406607 406648 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 4026 73.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
22590856 22590856 PRJNA938397_S_NODE_4858_length_424_cov_281.666667_g4630_i0 PRJNA938397 4858 424 281.666667 1194.26666808 Nitrospira sp. 70125 Bacteria Bacteria 73.1 3.14e-8   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g4630 i0 97.619 9.49528301886792 42 1 10 0 383 424 406648 406607 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 4026 73.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
28358356 28358356 PRJNA938397_S_NODE_21546_length_238_cov_3.164179_g21305_i0 PRJNA938397 21546 238 3.164179 7.53074602 Pseudomonadati 3379134 Bacteria Bacteria 87.8 1.14e-20   NR HDO67000.1 2026887 g21305 i0 57.7 2.68487394957983 71 30 89.5 0 8 220 10 80 HDO67000.1 DUF1731 domain-containing protein [Nitrospirota bacterium] diamond 639 87.8 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;