RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA938397", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA938397 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27941090 27941090 PRJNA938397_S_NODE_27505_length_210_cov_12.109827_g27264_i0 PRJNA938397 27505 210 12.109827 25.4306367 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 67 3.79e-11   NR MBM4304803.1 2026735 g27264 i0 72.5 4.21428571428571 40 11 57.1 0 5 124 238 277 MBM4304803.1 S-formylglutathione hydrolase [Deltaproteobacteria bacterium] diamond 885 67 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29835408 29835408 PRJNA938397_S_NODE_19891_length_247_cov_23.123810_g19650_i0 PRJNA938397 19891 247 23.12381 57.1158107 Polyangiaceae bacterium 2268199 Bacteria Bacteria 42.4 0.00884   NR HEY6559951.1 2268199 g19650 i0 40 0.48582995951417 40 24 48.6 0 164 45 40 79 HEY6559951.1 hypothetical protein [Polyangiaceae bacterium] diamond 120 42.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32554673 32554673 PRJNA938397_S_NODE_33579_length_190_cov_5.366013_g33338_i0 PRJNA938397 33579 190 5.366013 10.1954247 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42.7 0.0174   NR MBW1914467.1 2026735 g33338 i0 46.9 0.773684210526316 49 25 75.8 1 176 33 179 227 MBW1914467.1 peptide chain release factor N(5)-glutamine methyltransferase [Deltaproteobacteria bacterium] diamond 147 42.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;