RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where bioproject = "PRJNA938397", tax_kingdom = "Metazoa" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 19 ✖

tax_kingdom 1

  • Metazoa · 19 ✖

tax_clade 1

bioproject 1

  • PRJNA938397 · 19 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11459771 11459771 PRJNA938397_S_NODE_27969_length_208_cov_23.894737_g27728_i0 PRJNA938397 27969 208 23.894737 49.70105296 Brachionus plicatilis 10195 Rotifera other_Eukaryota 57.8 4.91e-9   NR RNA21320.1 10195 g27728 i0 64.7 11.5240384615385 34 12 49 0 180 79 40 73 RNA21320.1 cytochrome c oxidase copper chaperone [Brachionus plicatilis] diamond 2397 57.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
16215414 16215414 PRJNA938397_S_NODE_13953_length_292_cov_15.050980_g13712_i0 PRJNA938397 13953 292 15.05098 43.9488616 Metazoa 33208 Rotifera other_Eukaryota 59.7 7.18e-8   NR CAF1021331.1 104777 g13712 i0 61.5 3.76027397260274 39 15 40.1 0 24 140 785 823 CAF1021331.1 unnamed protein product [Brachionus calyciflorus] diamond 1098 60.1 0.993344425956739 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
21315062 21315062 PRJNA938397_S_NODE_27837_length_209_cov_5.470930_g27596_i0 PRJNA938397 27837 209 5.47093 11.4342437 Brachionus plicatilis 10195 Rotifera other_Eukaryota 99.4 7.24e-23   NR RNA11224.1 10195 g27596 i0 67.6 1.96650717703349 68 21 96.2 1 6 206 188 255 RNA11224.1 cathepsin L [Brachionus plicatilis] diamond 411 99.4 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
21315638 21315638 PRJNA938397_S_NODE_42097_length_169_cov_4.318182_g41856_i0 PRJNA938397 42097 169 4.318182 7.29772758 Eurotatoria 2816136 Rotifera other_Eukaryota 113 1.44e-27   NR CAF1387427.1 249248 g41856 i0 85.7 11.9467455621302 56 8 99.4 0 168 1 559 614 CAF1387427.1 unnamed protein product [Adineta ricciae] diamond 2019 114 0.991228070175439 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
26930106 26930106 PRJNA938397_S_NODE_49842_length_155_cov_3.415254_g49601_i0 PRJNA938397 49842 155 3.415254 5.2936437 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 48.1 1.32e-4   NR CAF0715762.1 104777 g49601 i0 63.3 4.64516129032258 30 11 58.1 0 9 98 251 280 CAF0715762.1 unnamed protein product [Brachionus calyciflorus] diamond 720 48.1 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
27221390 27221390 PRJNA938397_S_NODE_22582_length_232_cov_10.246154_g22341_i0 PRJNA938397 22582 232 10.246154 23.77107728 Metazoa 33208 Rotifera other_Eukaryota 84.7 5.36e-17   NR CAF0851289.1 104777 g22341 i0 58.9 4.22844827586207 56 23 72.4 0 231 64 334 389 CAF0851289.1 unnamed protein product [Brachionus calyciflorus] diamond 981 84.7 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
28383024 28383024 PRJNA938397_S_NODE_42726_length_168_cov_2.580153_g42485_i0 PRJNA938397 42726 168 2.580153 4.33465704 Didymodactylos carnosus 1234261 Rotifera other_Eukaryota 89.7 5.89e-22   NR CAF1459940.1 1234261 g42485 i0 71.9 4 57 14 98.2 2 3 167 7 63 CAF1459940.1 unnamed protein product, partial [Didymodactylos carnosus] diamond 672 89.7 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Didymodactylos Didymodactylos carnosus
28477810 28477810 PRJNA938397_S_NODE_16146_length_273_cov_8.394068_g15905_i0 PRJNA938397 16146 273 8.394068 22.91580564 Brachionus plicatilis 10195 Rotifera other_Eukaryota 66.2 2.85e-10   NR RNA36379.1 10195 g15905 i0 47.7 7.87912087912088 65 34 71.4 0 232 38 719 783 RNA36379.1 inner nuclear membrane Man1 [Brachionus plicatilis] diamond 2151 66.2 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
30119622 30119622 PRJNA938397_S_NODE_22832_length_231_cov_7.108247_g22591_i0 PRJNA938397 22832 231 7.108247 16.42005057 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 70.9 2.12e-12   NR CAF0893039.1 104777 g22591 i0 58.2 0.714285714285714 55 22 71.4 1 227 63 234 287 CAF0893039.1 unnamed protein product [Brachionus calyciflorus] diamond 165 70.9 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
30442884 30442884 PRJNA938397_S_NODE_26073_length_216_cov_5.407821_g25832_i0 PRJNA938397 26073 216 5.407821 11.68089336 Metazoa 33208 Rotifera other_Eukaryota 67.8 2.82e-11   NR CAF0762324.1 104777 g25832 i0 56.9 6.72222222222222 58 23 79.2 2 17 187 264 320 CAF0762324.1 unnamed protein product [Brachionus calyciflorus] diamond 1452 67.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
30727067 30727067 PRJNA938397_S_NODE_17474_length_263_cov_21.907080_g17233_i0 PRJNA938397 17474 263 21.90708 57.6156204 Eurotatoria 2816136 Rotifera other_Eukaryota 69.7 1.34e-11   NR CAF3670618.1 392033 g17233 i0 43.5 4.24334600760456 62 34 70.7 1 1 186 320 380 CAF3670618.1 unnamed protein product [Rotaria sordida] diamond 1116 70.1 0.994293865905849 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sordida
31043399 31043399 PRJNA938397_S_NODE_31895_length_195_cov_4.993671_g31654_i0 PRJNA938397 31895 195 4.993671 9.73765845 Metazoa 33208 Rotifera other_Eukaryota 42.7 0.00628   NR UJR26311.1 104782 g31654 i0 64 3.84615384615385 25 9 38.5 0 188 114 67 91 UJR26311.1 hypothetical protein I4U23_007649 [Adineta vaga] diamond 750 42.7 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
31447098 31447098 PRJNA938397_S_NODE_13116_length_300_cov_21.212928_g12875_i0 PRJNA938397 13116 300 21.212928 63.638784 Rotaria sp. Silwood2 2762512 Rotifera other_Eukaryota 42 0.0284   NR CAF4502069.1 2762512 g12875 i0 33.3 0.6 60 40 60 0 4 183 16 75 CAF4502069.1 unnamed protein product, partial [Rotaria sp. Silwood2] diamond 180 42 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood2
31447099 31447099 PRJNA938397_S_NODE_27196_length_211_cov_43.408046_g26955_i0 PRJNA938397 27196 211 43.408046 91.59097706 Rotaria magnacalcarata 392030 Rotifera other_Eukaryota 40.4 0.0323   NR CAF4051568.1 392030 g26955 i0 47.5 0.568720379146919 40 20 55.5 1 208 92 39 78 CAF4051568.1 unnamed protein product, partial [Rotaria magnacalcarata] diamond 120 40.4 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria magnacalcarata
31984729 31984729 PRJNA938397_S_NODE_20598_length_243_cov_13.509709_g20357_i0 PRJNA938397 20598 243 13.509709 32.82859287 Adineta ricciae 249248 Rotifera other_Eukaryota 50.4 1.47e-5   NR CAF0988611.1 249248 g20357 i0 45.2 0.518518518518518 42 23 51.9 0 240 115 80 121 CAF0988611.1 unnamed protein product [Adineta ricciae] diamond 126 50.4 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
32403238 32403238 PRJNA938397_S_NODE_28159_length_208_cov_3.017544_g27918_i0 PRJNA938397 28159 208 3.017544 6.27649152 Metazoa 33208 Rotifera other_Eukaryota 73.9 1.93e-13   NR CAF1033404.1 104777 g27918 i0 65.9 7.91826923076923 44 13 63.5 1 3 134 337 378 CAF1033404.1 unnamed protein product, partial [Brachionus calyciflorus] diamond 1647 73.9 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
32529979 32529979 PRJNA938397_S_NODE_45159_length_163_cov_3.793651_g44918_i0 PRJNA938397 45159 163 3.793651 6.18365113 Metazoa 33208 Rotifera other_Eukaryota 56.6 8.98e-8   NR CAF3414080.1 392032 g44918 i0 57.9 5.59509202453988 38 16 69.9 0 6 119 185 222 CAF3414080.1 unnamed protein product [Rotaria socialis] diamond 912 56.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria socialis
32593005 32593005 PRJNA938397_S_NODE_53439_length_150_cov_1.362832_g53198_i0 PRJNA938397 53439 150 1.362832 2.044248 Metazoa 33208 Rotifera other_Eukaryota 86.7 2.84e-18   NR RMZ99815.1 10195 g53198 i0 85.7 2.94 49 7 98 0 149 3 362 410 RMZ99815.1 cAMP-dependent kinase type I-beta regulatory subunit isoform X1 [Brachionus plicatilis] diamond 441 87 0.996551724137931 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
32680080 32680080 PRJNA938397_S_NODE_11380_length_319_cov_4.237589_g11139_i0 PRJNA938397 11380 319 4.237589 13.51790891 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 55.1 4.23e-6   NR CAF0726300.1 104777 g11139 i0 48.1 0.489028213166144 52 27 48.9 0 312 157 578 629 CAF0726300.1 unnamed protein product [Brachionus calyciflorus] diamond 156 55.1 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;