RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA938397", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA938397 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28326758 28326758 PRJNA938397_S_NODE_39326_length_175_cov_5.355072_g39085_i0 PRJNA938397 39326 175 5.355072 9.371376 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0147   NR ETO21862.1 46433 g39085 i0 50 1.90285714285714 30 15 51.4 0 19 108 8 37 ETO21862.1 Dual specificity phosphatase, catalytic domain containing protein [Reticulomyxa filosa] diamond 333 43.1 0.990719257540603 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29361888 29361888 PRJNA938397_S_NODE_14989_length_283_cov_6.077236_g14748_i0 PRJNA938397 14989 283 6.077236 17.19857788 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 106 1.17e-24   NR ETO28832.1 46433 g14748 i0 64.9 1.5583038869258 74 26 78.4 0 4 225 357 430 ETO28832.1 hypothetical protein RFI_08294 [Reticulomyxa filosa] diamond 441 106 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;